|
| Status |
Public on Feb 27, 2024 |
| Title |
Control ChIP-seq from whole organism (ENCLB692MYN) |
| Sample type |
SRA |
| |
|
| Source name |
Caenorhabditis elegans strain OP355 (unc-119(tm4063) III; wgIs355) mixed sex L4 larva insertion targeting C. elegans mdl-1
|
| Organism |
Caenorhabditis elegans |
| Characteristics |
cell_type: whole organism
biomaterial_type: whole organisms
biosample encode accession: ENCBS870DFV (SAMN40085801)
collection date: not applicable
geographic location: not applicable
encode accession: ENCBS870DFV
note: Transgenic C. elegans line, stably expressing a C-terminal GFP-FLAG tag fused to KLU-1
Sex: pooled male and female
dev stage: L4 larva
age: unknown
donor_id: ENCDO957CRR
lab: Michael Snyder, Stanford
source: Michael Snyder
link: ENCBS870DFV at ENCODE; https://www.encodeproject.org/ENCBS870DFV/
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
https://www.encodeproject.org/experiments/ENCSR534YJS/
***************
biological replicate number: 2
technical replicate number: 1
description: Input ChIP-seq in L4 larva worms.
experiment encode accession: ENCSR534YJS
assay title: Control ChIP-seq
assembly: ce11, ce10
encode release date: 2017-11-28
lab: Michael Snyder, Stanford
library encode accession: ENCLB692MYN
fragmentation methods: sonication (generic microtip)
|
| Data processing |
See GSM*_README.txt supplementary file linked below
|
| |
|
| Submission date |
Feb 26, 2024 |
| Last update date |
Feb 27, 2024 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL13776 |
| Series (1) |
| GSE259209 |
Control ChIP-seq from whole organism (ENCSR534YJS) |
|
| Relations |
| BioSample |
SAMN40085801 |
