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Status
Public on Feb 12, 2002
Title
CGH_Albertson_MDA-MB-453
Sample type
genomic
Channel 1
Source name
Cell line MDA-MB-453
Organism
Homo sapiens
Extracted molecule
genomic DNA
Channel 2
Source name
normal male reference genomic DNA
Organism
Homo sapiens
Extracted molecule
genomic DNA
Description
ATCC cell line <a href="http://www.atcc.org/SearchCatalogs/longview.cfm?view=ce,5144832,HTB-131&text=HTB%2D131 ">HTB-131</a>. Breast adenocarcinoma derived from pleural effusion in a 48 year old female. DA-MB-453 was derived in 1976 by R. Cailleau et al. from an effusion of a 48 year old female patient with metastatic carcinoma of the breast, involving the nodes, brain and both pleural and pericardial cavities. The cells overexpress FGF receptors.
Submission date
Jan 17, 2002
Last update date
May 27, 2005
Contact name
Donna G Albertson
E-mail(s)
albertson@cc.ucsf.edu
Phone
415 502-8463
Organization name
University of California San Francisco
Department
Comprehensive Cancer Center
Street address
City
San Francisco
State/province
CA
ZIP/Postal code
94143
Country
USA
Platform ID
GPL28
Series (1)
GSE16
Microarray-based CGH in human cancer cell lines
Data table header descriptions
ID_REF
Unique row identifier, genome position order
VALUE
aka LOG2RATIO, mean of log base 2 of LINEAR_RATIO
LINEAR_RATIO
Mean of replicate Cy3/Cy5 ratios
LOG2STDDEV
Standard deviation of VALUE
NO_REPLICATES
Number of replicate spot measurements
Data table
ID_REF
VALUE
LINEAR_RATIO
LOG2STDDEV
NO_REPLICATES
1
-0.758224
0.591224
0.178588
3
2
0
3
-0.002429
0.998318
0.012
3
4
-0.074741
0.949513
0.010665
3
5
-0.080859
0.945495
0.019081
3
6
0.027808
1.019462
0.018764
3
7
-0.065754
0.955446
0.009019
3
8
0.080929
1.057699
0.003328
3
9
0.00896
1.00623
0.01379
3
10
-0.056604
0.961525
0.005056
3
11
-0.033613
0.97697
0.018592
3
12
0
13
0.014484
1.01009
0.00191
3
14
0.073939
1.052587
0.016403
3
15
-0.036401
0.975084
0.008785
3
16
-0.009344
0.993544
0.016721
3
17
0.10249
1.073625
0.023111
2
18
0.058332
1.041261
0.008116
3
19
0.077036
1.054849
0.007662
3
20
-0.119705
0.920376
0.034472
3
Total number of rows: 2463 Table truncated, full table size 78 Kbytes .Supplementary data files not provided