|
| Status |
Public on Jun 21, 2024 |
| Title |
WT2 |
| Sample type |
SRA |
| |
|
| Source name |
Endosperm
|
| Organism |
Zea mays |
| Characteristics |
tissue: Endosperm
background: W22
gene id: Zm00001d040189/Zm00001d008403
genotype: Wild type
age: 15 DAP
|
| Extracted molecule |
total RNA |
| Extraction protocol |
5-10 of 15 DAP endosperms of wild type and mutant were pooled for extracting total RNA with an RNAprep Pure Plant Kit (TIANGEN)
MP3RNA-seq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
15DAP_WT
|
| Data processing |
Trimmomatic (version 0.39) was used to trim the sequence reads and Hisat2 (version 2.2.1) was used to align them to the B73 v4 reference genome.
Assembly: Zea mays ssp mays B73 v4
Supplementary files format and content: Matrix table with raw counts for every sample (column) and gene (rows)
|
| |
|
| Submission date |
Mar 24, 2024 |
| Last update date |
Jun 21, 2024 |
| Contact name |
Teng Song |
| E-mail(s) |
huoqiang@cau.edu.cn
|
| Organization name |
China agricultural university
|
| Street address |
Yuanmingyuan West Road
|
| City |
Beijing |
| ZIP/Postal code |
100193 |
| Country |
China |
| |
|
| Platform ID |
GPL25410 |
| Series (1) |
| GSE262336 |
The biosynthesis of storage reserves and auxin is coordinated by a hierarchical regulatory network in maize endosperm [RNA-Seq] |
|
| Relations |
| BioSample |
SAMN40594242 |
| SRA |
SRX24035295 |
