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GEO accession:
Sample GSM816639
Query DataSets for GSM816639
Status
Public on Oct 14, 2011
Title
Duke_DnaseSeq_HPDE6-E6E7
Sample type
SRA
Source name
HPDE6-E6E7
Organism
Homo sapiens
Characteristics
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell description: pancreatic duct cells immortalized with E6E7 gene of HPV
cell karyotype: normal
controlid: generic_female
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell karyotype: Unknown
cell lineage: endoderm
cell sex: F
controlid: generic_female
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider
Dr. Ming-Sound Tsao, Ontario Cancer Institute
Growth protocol
HPDE6-E6E7_Crawford_protocol.pdf
Extracted molecule
genomic DNA
Extraction protocol
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
Library strategy
DNase-Hypersensitivity
Library source
genomic
Library selection
DNAse
Instrument model
Illumina Genome Analyzer
Data processing
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
Submission date
Oct 13, 2011
Last update date
May 15, 2019
Contact name
ENCODE DCC
E-mail(s)
encode-help@lists.stanford.edu
Organization name
ENCODE DCC
Street address
300 Pasteur Dr
City
Stanford
State/province
CA
ZIP/Postal code
94305-5120
Country
USA
Platform ID
GPL9052
Series (1)
GSE32970
Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
Relations
Reanalyzed by
GSE53962
Reanalyzed by
GSE54296
Reanalyzed by
GSE59016
SRA
SRX100896
BioSample
SAMN00739107
Named Annotation
GSM816639_hg19_wgEncodeOpenChromDnaseHpde6e6e7BaseOverlapSignal.bigWig
Named Annotation
GSM816639_hg19_wgEncodeOpenChromDnaseHpde6e6e7Sig.bigWig
Supplementary file
Size
Download
File type/resource
GSM816639_hg19_wgEncodeOpenChromDnaseHpde6e6e7BaseOverlapSignal.bigWig
1.2 Gb
(ftp)
(http)
BIGWIG
GSM816639_hg19_wgEncodeOpenChromDnaseHpde6e6e7Pk.narrowPeak.gz
2.1 Mb
(ftp)
(http)
NARROWPEAK
GSM816639_hg19_wgEncodeOpenChromDnaseHpde6e6e7Sig.bigWig
3.3 Gb
(ftp)
(http)
BIGWIG
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
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