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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 14, 2011 |
| Title |
Duke_DnaseSeq_GM12892 |
| Sample type |
SRA |
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| Source name |
GM12892
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| Organism |
Homo sapiens |
| Characteristics |
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed
controlid: generic_female
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell description: B-Lymphocyte, Lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, Treatment: Epstein-Barr Virus transformed
cell karyotype: unknown
cell lineage: mesoderm
cell sex: F
treatment: None
treatment description: No special treatment or protocol applies
controlid: generic_female
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
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| Biomaterial provider |
Coriell
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| Treatment protocol |
None
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| Growth protocol |
GM12892_Crawford_protocol.pdf
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
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| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina Genome Analyzer |
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| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
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| Submission date |
Oct 13, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
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| Organization name |
ENCODE DCC
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| Street address |
300 Pasteur Dr
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| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE32970 |
Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University) |
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| Relations |
| Reanalyzed by |
GSM1002665 |
| Reanalyzed by |
GSE53962 |
| Reanalyzed by |
GSE54296 |
| Reanalyzed by |
GSE59016 |
| SRA |
SRX100909 |
| BioSample |
SAMN00739120 |
| Named Annotation |
GSM816657_hg19_wgEncodeOpenChromDnaseGm12892BaseOverlapSignal.bigWig |
| Named Annotation |
GSM816657_hg19_wgEncodeOpenChromDnaseGm12892Sig.bigWig |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM816657_hg19_wgEncodeOpenChromDnaseGm12892BaseOverlapSignal.bigWig |
959.8 Mb |
(ftp)(http) |
BIGWIG |
| GSM816657_hg19_wgEncodeOpenChromDnaseGm12892Pk.narrowPeak.gz |
2.6 Mb |
(ftp)(http) |
NARROWPEAK |
| GSM816657_hg19_wgEncodeOpenChromDnaseGm12892Sig.bigWig |
3.3 Gb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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