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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 15, 2024 |
| Title |
BMSC,dex3,day4 |
| Sample type |
SRA |
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| Source name |
bone
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| Organism |
Rattus |
| Characteristics |
tissue: bone
cell line: BMSC
cell type: Mesenchymal stem cells
genotype: WT
treatment: DEX
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Rneasy mini plus kit(Qiagen).1.3ug of total RNA was used for the construction of sequencing libraries.
RNA libraries for RNA-seq were prepared using SMARTER mRNA-Seq Library Prep Kit following manufacture's protocols.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
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| Description |
dex 4d
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| Data processing |
GLC Genomics Workbench v 11.0.1
Assembly: mm10
Supplementary files format and content: tab-delimited text file includes raw counts for each sample
Supplementary files format and content: tab-delimited text file includes read counts for each sample
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| Submission date |
Apr 10, 2024 |
| Last update date |
Apr 15, 2024 |
| Contact name |
yongle yu |
| E-mail(s) |
2022203030033@whu.edu.cn
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| Phone |
+8615527839098
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| Organization name |
武汉大学第二临床学院
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| Street address |
Wuhan, Hubei, China
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| City |
Wuhan, Hubei, China |
| State/province |
湖北 |
| ZIP/Postal code |
430061 |
| Country |
China |
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| Platform ID |
GPL32253 |
| Series (1) |
| GSE263681 |
Gene expression of rat BMSCs stimulated with or without dexamethasone |
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| Relations |
| BioSample |
SAMN40921151 |
| SRA |
SRX24216350 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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