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Sample GSM822273 Query DataSets for GSM822273
Status Public on Oct 25, 2011
Title UT-A_ChipSeq_HeLa-S3_Pol2
Sample type SRA
 
Source name HeLa-S3
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell lineage: ectoderm
treatment: None
treatment description: No special treatment or protocol applies
antibody antibodydescription: mouse monoclonal, clone 8WG16. Antibody Target: POL2
antibody targetdescription: RNA Polymerase II
antibody vendorname: Covance
antibody vendorid: MMS-126R
controlid: wgEncodeEH000539
labversion: baseAlignCounts.pl v 1,fseq v 1.84, iff_HelaS3,p-value cutoff: 0.05,1% ENCODE array platform validation tests
replicate: 1,2
antibody vendorname: Covance
antibody vendorid: MMS-126R
controlid: HeLa-S3/Input
labversion: align_on_cluster_bwa.pl v 1
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Growth protocol HeLa-S3_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
 
Submission date Oct 25, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (2)
GSE33213 Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin)
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSM1002653
SRA SRX102974
BioSample SAMN00744144
Named Annotation GSM822273_hg19_wgEncodeOpenChromChipHelas3Pol2BaseOverlapSignal.bigWig
Named Annotation GSM822273_hg19_wgEncodeOpenChromChipHelas3Pol2Sig.bigWig

Supplementary file Size Download File type/resource
GSM822273_hg19_wgEncodeOpenChromChipHelas3Pol2BaseOverlapSignal.bigWig 115.8 Mb (ftp)(http) BIGWIG
GSM822273_hg19_wgEncodeOpenChromChipHelas3Pol2Pk.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM822273_hg19_wgEncodeOpenChromChipHelas3Pol2Sig.bigWig 1.8 Gb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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