|
| Status |
Public on Dec 20, 2011 |
| Title |
3d |
| Sample type |
SRA |
| |
|
| Source name |
3d
|
| Organism |
Physcomitrium patens |
| Characteristics |
tissue: leafy shoot
developmental stage: 3d
|
| Growth protocol |
samples taken from P. patens protonema at 3, 14 and 24 days, and also from or leafy shoot tissues l at 30 days after protoplastes isolated, and from 14-day-old caulonemal and chloronemal tissues.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extracted from P. patens protonema at 3, 14 and 24 days, and also from or leafy shoot tissues l at 30 days after protoplastes isolated, and from 14-day-old caulonemal and chloronemal tissues.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
non-genomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
Adaptor tags, low quality tags and tags of copy number=1 were filtered,then the distinct clean tags were aligned to the reference P.patens database by bowtie.
|
| |
|
| Submission date |
Oct 27, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Lihong Xiao |
| E-mail(s) |
xiaolihong6290@gmail.com
|
| Organization name |
Capital Normal University
|
| Street address |
No.105 North Road of West 3rd-ring Road.Haidian District
|
| City |
Beijing |
| ZIP/Postal code |
100048 |
| Country |
China |
| |
|
| Platform ID |
GPL14798 |
| Series (1) |
| GSE33279 |
Genome-wide transcriptome analysis of gametophyte development in Physcomitrella patens |
|
| Relations |
| SRA |
SRX104403 |
| BioSample |
SAMN00750181 |
