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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jun 23, 2024 |
| Title |
H46K_Spleen_CMV_RNA |
| Sample type |
SRA |
| |
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| Source name |
Spleen
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| Organism |
Macaca mulatta |
| Characteristics |
tissue: Spleen
cell line: primary cells
cell type: VY9 specific CD8
|
| Treatment protocol |
Cells sorted from chronically infected Rhesus Macaques
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| Extracted molecule |
total RNA |
| Extraction protocol |
10x Genomics pipeline
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq X |
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| Description |
RNA
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| Data processing |
Demultiplexing
CellRanger
Seurat
Assembly: Rhesus Macaque
Supplementary files format and content: For RNAseq: files are filtered barcodes, features and matrix
Supplementary files format and content: For TCRseq: files are filtered contig anotations
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| Submission date |
Jun 18, 2024 |
| Last update date |
Jun 23, 2024 |
| Contact name |
Jennifer Simpson |
| E-mail(s) |
jen.simpson@nih.gov
|
| Organization name |
NIAID
|
| Street address |
4 Center Drive
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20892 |
| Country |
USA |
| |
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| Platform ID |
GPL34625 |
| Series (1) |
| GSE270230 |
Single cell, multiomic analysis of SIV specific CD8 T cells from multiple anatomical sites |
|
| Relations |
| BioSample |
SAMN41886358 |
| SRA |
SRX24960716 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8337644_H46K_Spleen_barcodes.tsv.gz |
13.4 Kb |
(ftp)(http) |
TSV |
| GSM8337644_H46K_Spleen_features.tsv.gz |
185.6 Kb |
(ftp)(http) |
TSV |
| GSM8337644_H46K_Spleen_matrix.mtx.gz |
12.5 Mb |
(ftp)(http) |
MTX |
SRA Run Selector |
| Raw data are available in SRA |
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