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| Status |
Public on Jun 24, 2024 |
| Title |
SELEX_FOXC2_Round3_pH7.8 |
| Sample type |
SRA |
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| Source name |
synthetic construct
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| Organism |
synthetic construct |
| Characteristics |
tissue: synthetic construct
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| Extracted molecule |
other |
| Extraction protocol |
After each round of selection and PCR amplification, product was purified using the MinElute PCR purification kit (Qiagen 28004)
The initial library was generated with 16bp randomized central region and flanking PCR sites. This was synthesized by Integrated DNA Technologies (IDT)
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| Library strategy |
SELEX |
| Library source |
other |
| Library selection |
other |
| Instrument model |
Illumina MiniSeq |
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| Data processing |
Data processed by University of California, Davis Bioinformatics Core using the published ‘R’ “SELEX” package which is publicly available at: (bioconductor.org/packages/release/bioc/html/SELEX.html).
Assembly: synthetic
Supplementary files format and content: xls files for processed data with enrichment scores
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| Submission date |
Jun 20, 2024 |
| Last update date |
Jul 06, 2024 |
| Contact name |
Kyle Kisor |
| E-mail(s) |
kyle.kisor@ucsf.edu
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| Organization name |
UC San Francisco
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| Street address |
505 parnassus Ave
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| City |
San Francisco |
| ZIP/Postal code |
94143 |
| Country |
USA |
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| Platform ID |
GPL26967 |
| Series (1) |
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| Relations |
| SRA |
SRX24671759 |
| BioSample |
SAMN41463835 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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