|
Status |
Public on Jun 26, 2024 |
Title |
con-055-2 |
Sample type |
SRA |
|
|
Source name |
ipNF05.5
|
Organism |
Homo sapiens |
Characteristics |
cell line: ipNF05.5 cell type: Schwann Cell genotype: siControl
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from cell lines and tumor tissues using the RNeasy Plus Mini Kit (Qiagen #74136) The library was prepared using the Illumina® Stranded mRNA Prep kit followed by RNAseq on Illumina HiSeq platform
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 1500 |
|
|
Data processing |
Trimglore Sequencing reads were mapped to human hg38 genome using HISAT2 Samtools sam to bam Featurecount Assembly: Hg38 Supplementary files format and content: Tab-delimited text file including raw counts for each samples
|
|
|
Submission date |
Jun 26, 2024 |
Last update date |
Jun 26, 2024 |
Contact name |
Chenhao Hu |
E-mail(s) |
huchenhaotiantan@gmail.com
|
Organization name |
Beijing Neurosurgical Institute
|
Street address |
No.119 South Fourth Ring West Road, Fengtai District, Beijing, China
|
City |
Beijing |
ZIP/Postal code |
100000 |
Country |
China |
|
|
Platform ID |
GPL18460 |
Series (1) |
GSE270880 |
TSPO deficiency promotes the progression of malignant peripheral sheath tumors by regulating the G2/M phase of the cell cycle via CDK1 |
|
Relations |
BioSample |
SAMN42088504 |
SRA |
SRX25090995 |