|
Status |
Public on Jul 09, 2024 |
Title |
Tet1, Cortex, bACE, KO Rep7 |
Sample type |
genomic |
|
|
Source name |
Adult Cortex
|
Organism |
Mus musculus |
Characteristics |
tissue: Adult Cortex genotype: KO
|
Treatment protocol |
Bisulfite treated followed by Bisulfite-assisted APOBEC3A-coupled epigenetic (bACE) protocol
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted using standard Phenol:Chloform extraction
|
Label |
Cy3 and Cy5
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Bisulfite and bACE converted DNA was amplified, fragmented, and hybridized to Illumina Infinium Mouse285 Methylation BeadChip 12v1-0 using standard Illumina Protocol
|
Scan protocol |
Standard Illumina Protocol
|
Description |
KO7_bACE
|
Data processing |
SeSAMe R Package Beta values of individual probe for each individual sample. Probes that did not pass SeSAMe quality control pOOBAH approach is maksed with NA Processed data file: Tet1_array_betas.csv
|
|
|
Submission date |
Jul 02, 2024 |
Last update date |
Jul 09, 2024 |
Contact name |
Yee Hoon Foong |
Organization name |
University of Pennsylvania
|
Street address |
3400 Civic Center Blvd
|
City |
Philadelphia |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
|
|
Platform ID |
GPL31950 |
Series (1) |
GSE271375 |
TET1 Displays Catalytic and Non-catalytic Functions in the Adult Mouse Cortex [Methylation array] |
|