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Sample GSM8375762 Query DataSets for GSM8375762
Status Public on Jul 09, 2024
Title Tet1, Cortex, bACE, KO Rep7
Sample type genomic
 
Source name Adult Cortex
Organism Mus musculus
Characteristics tissue: Adult Cortex
genotype: KO
Treatment protocol Bisulfite treated followed by Bisulfite-assisted APOBEC3A-coupled epigenetic (bACE) protocol
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted using standard Phenol:Chloform extraction
Label Cy3 and Cy5
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulfite and bACE converted DNA was amplified, fragmented, and hybridized to Illumina Infinium Mouse285 Methylation BeadChip 12v1-0 using standard Illumina Protocol
Scan protocol Standard Illumina Protocol
Description KO7_bACE
Data processing SeSAMe R Package
Beta values of individual probe for each individual sample. Probes that did not pass SeSAMe quality control pOOBAH approach is maksed with NA
Processed data file: Tet1_array_betas.csv
 
Submission date Jul 02, 2024
Last update date Jul 09, 2024
Contact name Yee Hoon Foong
Organization name University of Pennsylvania
Street address 3400 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL31950
Series (1)
GSE271375 TET1 Displays Catalytic and Non-catalytic Functions in the Adult Mouse Cortex [Methylation array]

Supplementary file Size Download File type/resource
GSM8375762_KO-Adult-Bace-7_Grn.idat.gz 2.4 Mb (ftp)(http) IDAT
GSM8375762_KO-Adult-Bace-7_Red.idat.gz 2.6 Mb (ftp)(http) IDAT

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