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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 12, 2024 |
| Title |
Couptf1_WT_2 |
| Sample type |
SRA |
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| Source name |
Cerebral Cortex
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| Organism |
Mus musculus |
| Characteristics |
tissue: Cerebral Cortex
cell type: Superficial layer projection neurons
genotype: Couptf1 wild-type
treatment: RFP electroporation
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| Treatment protocol |
N/A
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| Growth protocol |
N/A
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNAeasy - Qiagen
Smartseq v4 Ultra Low Input - Takara
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
TopHat and Cufflinks
Assembly: mm10
Supplementary files format and content: tab-delimited text file
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| Submission date |
Jul 06, 2024 |
| Last update date |
Jul 12, 2024 |
| Contact name |
Luciano Custo Greig |
| E-mail(s) |
custogreig@gmail.com
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| Organization name |
University of California, San Francisco
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| Department |
Ophthalmology
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| Street address |
490 Illinois St
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platform ID |
GPL13112 |
| Series (1) |
| GSE271632 |
BEAM: a combinatorial recombinase toolbox for binary gene expression and mosaic genetic analysis |
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| Relations |
| BioSample |
SAMN42348144 |
| SRA |
SRX25226710 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM8380935_Couptf1_BEAM_red_2_Cufflink_assembled_transcripts.gtf.gz |
2.9 Mb |
(ftp)(http) |
GTF |
SRA Run Selector |
| Raw data are available in SRA |
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