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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 10, 2024 |
| Title |
Plasma from HGPS, 194p |
| Sample type |
SRA |
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| Source name |
sodium heparin plasma
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| Organism |
Homo sapiens |
| Characteristics |
tissue: sodium heparin plasma
genotype: HGPS
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| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA and miRNA from tissue and cells was isolated using the RNeasy Mini Kit (Qiagen)
Library miR preparation was performed using CleanTag™ Small RNA Library Preparation Kit
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| Library strategy |
miRNA-Seq |
| Library source |
transcriptomic |
| Library selection |
size fractionation |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
miND pipeline by TAmiRNA (Diendorfer et al.)
Assembly: GRCh38
Supplementary files format and content: raw miRNA reads CSV quantified with miND pipeline
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| Submission date |
Jul 09, 2024 |
| Last update date |
Jul 10, 2024 |
| Contact name |
Andreas B Diendorfer |
| E-mail(s) |
service@tamirna.com
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| Organization name |
TAmiRNA GmbH
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| Street address |
Leberstraße 20
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| City |
Wien |
| ZIP/Postal code |
1110 |
| Country |
Austria |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE271848 |
Aged vascular niche hinders osteogenesis of mesenchymal stem cells through paracrine repression of Wnt-axis |
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| Relations |
| BioSample |
SAMN42390392 |
| SRA |
SRX25261120 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
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