|
| Status |
Public on Jul 26, 2024 |
| Title |
AAV5-C1 |
| Sample type |
SRA |
| |
|
| Source name |
vector
|
| Organism |
synthetic construct |
| Characteristics |
cell type: vector
|
| Treatment protocol |
AAV production performed by Andelyn Biosciences
|
| Growth protocol |
AAV production performed by Andelyn Biosciences
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Performed by Azenta Life Sciences Inc.
Illumina library prep performed by Azenta Life Sciences Inc.
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiSeq 1500 |
| |
|
| Data processing |
BCL files demultiplexing into FASTQ files
Data trimming and mapping
Host-virus chimeric site detection
Vaariant detection
Assembly: Performed by Azenta Life Sciences Inc.
Supplementary files format and content: .csv file for each sample containing aligned sequences
|
| |
|
| Submission date |
Jul 19, 2024 |
| Last update date |
Jul 26, 2024 |
| Contact name |
Scott Harper |
| E-mail(s) |
scott.harper@nationwidechildrens.org
|
| Phone |
6143552893
|
| Organization name |
The Research Institute at Nationwide Children's Hospital
|
| Street address |
Center for Gene Therapy, 575 Children’s Crossroads Room WC3740
|
| City |
Columbus |
| State/province |
Ohio |
| ZIP/Postal code |
43215 |
| Country |
USA |
| |
|
| Platform ID |
GPL28978 |
| Series (1) |
| GSE272649 |
A Self-Complementary AAV Proviral Plasmid System to Reduce Aberrant Cross-Packaging and ITR Promoter Activity in AAV Vector Preparations (Short-read) |
|
| Relations |
| BioSample |
SAMN42649407 |
| SRA |
SRX25387443 |
