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Sample GSM841890 Query DataSets for GSM841890
Status Public on May 11, 2012
Title 86 Tumour
Sample type RNA
 
Source name Tongue, FFPE
Organism Homo sapiens
Characteristics gender: Man
age: 77
tnm: T2N0M0
quality (ctdiff): 6.7
detected genes (p<0.05): 7566
Extracted molecule total RNA
Extraction protocol RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
Label Cy3 + Cy5
Label protocol Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
 
Hybridization protocol Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
Scan protocol Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
Data processing Data were normalized using Cubiq spline. No background correction were done.
 
Submission date Dec 02, 2011
Last update date May 11, 2012
Contact name Matilda Rentoft
E-mail(s) matilda.rentoft@medbio.umu.se
Organization name Umea University
Department Medical Biosciences
Lab Pathology
Street address NUS
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL14951
Series (2)
GSE34105 Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)
GSE34115 Gene expression profiling of archival tongue carcinoma and normal tongue tissue

Data table header descriptions
ID_REF
VALUE GenomeStudio computed intensitys on probe level
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 482.3513 0
ILMN_2055271 276.7828 0.03793104
ILMN_2383229 31.20509 0.9931034
ILMN_1806310 97.94053 0.2931035
ILMN_1779670 103.2231 0.2724138
ILMN_1717783 46.4607 0.7206897
ILMN_1814316 67.59306 0.4310345
ILMN_2359168 216.8013 0.06551724
ILMN_1731507 33.79022 0.9655172
ILMN_1787689 179.2321 0.1068965
ILMN_3241953 56.01609 0.5206897
ILMN_1745607 10475.71 0
ILMN_2136495 39.35503 0.8413793
ILMN_1668111 34.52804 0.9482759
ILMN_2295559 61.28667 0.4689655
ILMN_1735045 3111.293 0
ILMN_1680754 129.955 0.1724138
ILMN_2375184 78.85071 0.3793103
ILMN_1659452 307.672 0.01724138
ILMN_1767388 104.9656 0.2655172

Total number of rows: 29377

Table truncated, full table size 850 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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