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Sample GSM841906 Query DataSets for GSM841906
Status Public on May 11, 2012
Title 24 Tumour
Sample type RNA
 
Source name Tongue, FFPE
Organism Homo sapiens
Characteristics gender: Man
age: 30
tnm: T2N0M0
quality (ctdiff): 6.8
detected genes (p<0.05): 9891
Extracted molecule total RNA
Extraction protocol RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
Label Cy3 + Cy5
Label protocol Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
 
Hybridization protocol Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
Scan protocol Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
Data processing Data were normalized using Cubiq spline. No background correction were done.
 
Submission date Dec 02, 2011
Last update date May 11, 2012
Contact name Matilda Rentoft
E-mail(s) matilda.rentoft@medbio.umu.se
Organization name Umea University
Department Medical Biosciences
Lab Pathology
Street address NUS
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL14951
Series (2)
GSE34105 Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)
GSE34115 Gene expression profiling of archival tongue carcinoma and normal tongue tissue

Data table header descriptions
ID_REF
VALUE GenomeStudio computed intensitys on probe level
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 549.1669 0
ILMN_2055271 145.5774 0.03793104
ILMN_2383229 64.11334 0.3241379
ILMN_1806310 48.74928 0.5827586
ILMN_1779670 94.50873 0.162069
ILMN_1717783 56.39093 0.4172414
ILMN_1814316 94.62349 0.162069
ILMN_2359168 77.32346 0.2310345
ILMN_1731507 45.526 0.6551724
ILMN_1787689 47.93705 0.6
ILMN_3241953 205.3065 0.006896552
ILMN_1745607 16274.16 0
ILMN_2136495 2492.221 0
ILMN_1668111 35.78554 0.9241379
ILMN_2295559 35.26256 0.9310345
ILMN_1735045 3649.949 0
ILMN_1680754 127.4115 0.06551724
ILMN_2375184 40.03986 0.8137931
ILMN_1659452 142.8551 0.04137931
ILMN_1767388 301.4222 0

Total number of rows: 29377

Table truncated, full table size 833 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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