NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM841930 Query DataSets for GSM841930
Status Public on May 11, 2012
Title 8 Tumour
Sample type RNA
 
Source name Tongue, FFPE
Organism Homo sapiens
Characteristics gender: Man
age: 37
tnm: T1N0M0
quality (ctdiff): 6
detected genes (p<0.05): 10927
Extracted molecule total RNA
Extraction protocol RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
Label Cy3 + Cy5
Label protocol Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
 
Hybridization protocol Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
Scan protocol Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
Data processing Data were normalized using Cubiq spline. No background correction were done.
 
Submission date Dec 02, 2011
Last update date May 11, 2012
Contact name Matilda Rentoft
E-mail(s) matilda.rentoft@medbio.umu.se
Organization name Umea University
Department Medical Biosciences
Lab Pathology
Street address NUS
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL14951
Series (2)
GSE34105 Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)
GSE34115 Gene expression profiling of archival tongue carcinoma and normal tongue tissue

Data table header descriptions
ID_REF
VALUE GenomeStudio computed intensitys on probe level
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 487.3198 0
ILMN_2055271 93.93396 0.09655172
ILMN_2383229 41.6763 0.7172414
ILMN_1806310 69.91597 0.2068966
ILMN_1779670 64.44553 0.2724138
ILMN_1717783 55.13194 0.4448276
ILMN_1814316 861.3127 0
ILMN_2359168 912.2343 0
ILMN_1731507 204.1839 0.003448276
ILMN_1787689 84.29733 0.1275862
ILMN_3241953 495.2763 0
ILMN_1745607 15648.67 0
ILMN_2136495 3360.074 0
ILMN_1668111 42.23578 0.6965517
ILMN_2295559 47.19264 0.6068966
ILMN_1735045 2847.389 0
ILMN_1680754 119.8987 0.02758621
ILMN_2375184 42.62583 0.6896552
ILMN_1659452 111.7293 0.04482759
ILMN_1767388 65.06291 0.262069

Total number of rows: 29377

Table truncated, full table size 831 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.