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Sample GSM841936 Query DataSets for GSM841936
Status Public on May 11, 2012
Title 54 Tumour
Sample type RNA
 
Source name Tongue, FFPE
Organism Homo sapiens
Characteristics gender: Woman
age: 67
tnm: T2N0M0
quality (ctdiff): 3
detected genes (p<0.05): 13353
Extracted molecule total RNA
Extraction protocol RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
Label Cy3 + Cy5
Label protocol Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
 
Hybridization protocol Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
Scan protocol Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
Data processing Data were normalized using Cubiq spline. No background correction were done.
 
Submission date Dec 02, 2011
Last update date May 11, 2012
Contact name Matilda Rentoft
E-mail(s) matilda.rentoft@medbio.umu.se
Organization name Umea University
Department Medical Biosciences
Lab Pathology
Street address NUS
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL14951
Series (2)
GSE34105 Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)
GSE34115 Gene expression profiling of archival tongue carcinoma and normal tongue tissue
Relations
Reanalyzed by GSM841980

Data table header descriptions
ID_REF
VALUE GenomeStudio computed intensitys on probe level
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 479.1909 0
ILMN_2055271 81.23651 0.02068966
ILMN_2383229 43.21033 0.5344828
ILMN_1806310 53.96019 0.2413793
ILMN_1779670 58.27421 0.1655172
ILMN_1717783 37.95825 0.7827586
ILMN_1814316 211.5853 0
ILMN_2359168 215.9309 0
ILMN_1731507 33.42632 0.9379311
ILMN_1787689 62.49028 0.1103448
ILMN_3241953 591.7093 0
ILMN_1745607 16603.01 0
ILMN_2136495 6262.22 0
ILMN_1668111 50.00149 0.3448276
ILMN_2295559 50.58044 0.3344828
ILMN_1735045 2418.061 0
ILMN_1680754 83.64774 0.02068966
ILMN_2375184 42.79699 0.5620689
ILMN_1659452 72.86995 0.04137931
ILMN_1767388 61.60422 0.1206897

Total number of rows: 29377

Table truncated, full table size 818 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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