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Sample GSM841941 Query DataSets for GSM841941
Status Public on May 11, 2012
Title 96 Control
Sample type RNA
 
Source name Tongue, FFPE
Organism Homo sapiens
Characteristics gender: Woman
age: 70
quality (ctdiff): 2.5
detected genes (p<0.05): 13502
Extracted molecule total RNA
Extraction protocol RNA were extracted using the High Pure RNA Paraffin Kit according to the manufacturer’s protocol
Label Cy3 + Cy5
Label protocol Labeling were performed according to manufacturers protocol (WG-DASL) (illumina)
 
Hybridization protocol Hybridization were performed according to manufacturers protocol (WG-DASL) (illumina)
Scan protocol Arrays were scanned with a BeadArray Reader (Illumina) and data was extracted using GenomeStudio software (Illumina).
Data processing Data were normalized using Cubiq spline. No background correction were done.
 
Submission date Dec 02, 2011
Last update date May 11, 2012
Contact name Matilda Rentoft
E-mail(s) matilda.rentoft@medbio.umu.se
Organization name Umea University
Department Medical Biosciences
Lab Pathology
Street address NUS
City Umea
ZIP/Postal code 90185
Country Sweden
 
Platform ID GPL14951
Series (2)
GSE34105 Gene expression profiling of archival tongue carcinoma and normal tongue tissue (all samples)
GSE34115 Gene expression profiling of archival tongue carcinoma and normal tongue tissue
Relations
Reanalyzed by GSM841985

Data table header descriptions
ID_REF
VALUE GenomeStudio computed intensitys on probe level
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 395.085 0
ILMN_2055271 80.02752 0.02413793
ILMN_2383229 36.66266 0.8103448
ILMN_1806310 61.91723 0.08275862
ILMN_1779670 46.89481 0.3965517
ILMN_1717783 47.68639 0.3758621
ILMN_1814316 737.46 0
ILMN_2359168 659.264 0
ILMN_1731507 82.32416 0.02413793
ILMN_1787689 67.92162 0.05517241
ILMN_3241953 648.1653 0
ILMN_1745607 13956.5 0
ILMN_2136495 12490.6 0
ILMN_1668111 38.97332 0.737931
ILMN_2295559 43.37539 0.5275862
ILMN_1735045 2437.428 0
ILMN_1680754 63.70827 0.07241379
ILMN_2375184 44.33671 0.4896552
ILMN_1659452 65.4099 0.06551724
ILMN_1767388 48.27624 0.3551724

Total number of rows: 29377

Table truncated, full table size 802 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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