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Sample GSM845 Query DataSets for GSM845
Status Public on Feb 12, 2002
Title YPD 12 h (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 12 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a75
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 100 57 105 117 85 39 32 41 107 148 .909 0 .027 .567 54 46 1.235 .981 .81 1.019 1.202 1142 177 97 112 106 121 .027
2 176 56 341 274 240 65 34 43 304 347 .896 0 -.166 .915 60 75 1.421 1.122 .704 .891 .515 909 177 97 112 124 139 -.166
3 117 54 21 42 9 52 33 42 11 53 .452 0 -.933 .677 30 28 2.333 1.909 .429 .524 .214 928 177 96 111 142 157 -.933
4 65 53 112 146 114 41 32 41 144 185 .926 0 .363 .794 45 59 .982 .778 1.018 1.286 .855 928 177 96 111 159 174 .363
5 67 53 1549 1762 1729 44 33 42 2188 2230 .859 0 .498 1.114 95 97 .896 .708 1.116 1.413 .838 928 177 96 111 177 192 .498
6 62 53 255 282 250 38 32 41 316 357 .904 0 .309 .871 48 57 1.02 .807 .98 1.239 .797 906 177 96 111 194 209 .309
7 57 51 7 39 7 38 32 41 8 49 .066 0 .193 .511 24 29 1 .875 1 1.143 .044 896 177 96 111 212 227 .193
8 58 52 36 4 39 32 41 5 46 .025 -100 .464 20 25 .017 928 177 95 110 229 244
9 58 50 6 35 5 39 30 38 6 44 .162 -100 .82 23 28 1.2 1 .833 1 .115 941 177 95 110 247 262 0
10 70 52 4 32 1 42 31 39 2 41 .216 0 -1 .583 21 20 4 2 .25 .5 .114 918 177 95 110 265 280 -1
11 76 52 5 35 5 46 30 38 6 44 .221 -100 .472 24 28 1 .833 1 1.2 .164 906 177 95 110 282 297 .263
12 74 49 27 53 29 37 34 .153 -100 .75 21 18 .086 906 177 95 110 300 315
13 61 47 5 28 1 40 27 34 1 35 .115 0 -2.322 .333 24 26 5 5 .2 .2 .06 928 177 94 109 317 332 -2.322
14 54 45 31 3 34 28 35 4 39 .116 -100 .938 20 26 .089 919 177 94 109 335 350
15 54 46 5 28 35 28 35 35 .15 -100 .463 22 19 .072 906 177 94 109 352 367
16 55 49 4 28 32 29 37 35 -.023 -100 .583 20 19 -.012 896 177 94 109 370 385
17 55 48 1 29 1 31 28 35 2 37 -.036 -100 .656 21 23 1 .5 1 2 -.024 928 177 93 108 387 402 1
18 54 48 8 32 4 32 28 35 6 41 -.056 0 -.415 .452 27 28 2 1.333 .5 .75 -.033 941 177 93 108 405 420 -.415
19 55 48 3 29 2 33 27 34 3 37 .103 -100 .639 23 24 1.5 1 .667 1 .064 918 177 93 108 423 438 0
20 57 50 1 29 1 35 28 35 2 37 .042 -100 .36 18 22 1 .5 1 2 .026 906 177 93 108 440 455 1

Total number of rows: 9216

Table truncated, full table size 1073 Kbytes.




Supplementary data files not provided
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