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Sample GSM84506 Query DataSets for GSM84506
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, Hot Phenol RNA Isolation 0 min (Replicate 2)
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture Hot Phenol RNA Isolation
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, Hot Phenol RNA Isolation
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 21, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3684 Hot phenol
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Flags VALUE UNF_VALUE
1 174 197 94 149 156 65 40 256 263 74 259 264 54 34 1.047 1.215 0.98 1.079 5.554 1.537 0 1.047 1.047
2 537 598 253 165 173 65 98 772 853 319 298 302 60 100 0.752 0.753 0.773 0.774 1.939 0.739 0 0.752 0.752
3 185 199 91 151 159 60 39 300 330 110 289 297 94 26 0.777 0.719 0.897 0.972 2.892 0.792 0 0.777 0.777
4 5868 7113 3568 175 194 270 100 6681 7646 3908 310 326 271 100 0.888 0.94 0.952 0.994 1.627 0.979 0 0.888 0.888
5 368 385 118 152 159 60 96 457 482 134 284 287 54 97 0.99 0.965 1.234 1.363 2.261 1.106 0 0.99 0.99
6 133 138 51 135 146 67 5 255 259 56 276 288 79 10 0.576 0.607 0.92 0.944 3.577 0.648 -50 0.576
7 309 361 202 163 176 89 62 529 561 186 355 382 114 77 0.627 0.708 1.032 0.966 3.37 0.954 0 0.627 0.627
8 1469 1564 679 208 300 666 55 1601 1965 2475 456 964 3258 0 0.968 0.825 1.023 1.086 2.287 0.091 0 0.968 0.968
9 121 128 54 120 191 508 0 225 236 61 255 587 2469 0 0.673 0.667 0.737 0.727 4.321 0.104 -50 0.673
10 146 154 76 77 84 35 42 219 233 80 195 197 36 33 1.265 1.111 1.091 1.159 3.842 1.147 0 1.265 1.265
11 153 167 79 70 74 30 55 223 229 61 187 187 30 45 1.302 1.407 1.574 1.431 3.11 2.184 0 1.302 1.302
12 339 359 154 67 72 28 96 446 481 169 182 184 29 99 0.924 0.884 1.013 1.018 1.714 0.974 0 0.924 0.924
13 351 387 164 70 78 66 86 382 441 177 183 187 55 87 1.259 1.118 1.354 1.366 1.902 1.184 0 1.259 1.259
14 147 157 69 75 83 70 15 214 228 67 197 204 62 15 1.432 1.259 1.703 1.723 3.747 2.992 0 1.432 1.432
15 5028 5443 2139 96 102 45 100 6020 6235 2882 224 231 48 100 0.845 0.884 0.876 0.969 1.834 0.85 0 0.845 0.845
16 319 329 116 108 114 47 91 398 415 125 222 226 49 90 1.031 1 1.155 1.237 2.24 0.155 0 1.031 1.031
17 115 122 54 87 92 37 26 203 206 40 198 201 40 12 0.939 1.056 1.466 1.161 3.671 0.899 0 0.939 0.939
18 267 272 104 76 82 34 86 357 374 123 191 193 30 89 0.979 0.922 1.163 1.154 2.173 0.976 0 0.979 0.979
19 73 79 31 80 94 159 0 197 197 31 196 208 217 0 -0.407 -0.185 1.143 1.177 3.614 0.421 -100 -0.407
20 524 586 283 80 87 49 97 1047 1133 498 201 204 36 99 0.502 0.521 0.558 0.562 1.884 0.495 -100 0.502

Total number of rows: 6979

Table truncated, full table size 710 Kbytes.




Supplementary data files not provided

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