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Sample GSM84615 Query DataSets for GSM84615
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 0 min (Replicate 5)..
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 0 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL3153
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 161 168 78 61 61 68 29 106 111 27 69 69 21 41 2.703 2.548 2.775 2.358 2.472 5.394 0.332 0 2.703 2.703
2 209 222 104 61 61 39 75 701 756 209 69 69 22 100 0.234 0.234 0.217 0.201 1.98 0.168 0.374 0 0.234 0.234
3 100 109 50 61 61 54 12 164 177 69 69 69 25 73 0.411 0.444 0.489 0.498 3.199 0.128 0 -50 0.411
4 1454 1771 1008 61 61 61 100 523 590 261 69 69 25 100 3.068 3.282 3.334 3.148 1.589 4.015 0.609 0 3.068 3.068
5 329 340 144 61 61 51 89 124 125 24 69 69 32 35 4.873 4.982 4.725 4.874 2.053 15.613 0.091 0 4.873 4.873
6 251 265 108 61 61 54 81 181 186 40 69 69 39 84 1.696 1.744 1.744 1.554 2.013 4.146 0.216 0 1.696 1.696
7 164 180 96 61 61 45 55 361 408 211 69 69 83 74 0.353 0.351 0.41 0.315 2.501 0.261 0.29 0 0.353 0.353
8 536 643 375 61 61 41 98 327 341 128 69 69 91 72 1.841 2.14 2.124 1.923 1.975 3.348 0.388 0 1.841 1.841
9 77 88 37 61 61 32 18 85 86 14 69 69 20 5 1 1.588 1.714 1.583 3.564 6.673 0.057 -50 1
10 125 140 69 61 61 25 59 110 120 37 69 69 15 68 1.561 1.549 1.6 1.426 2.268 2.594 0.358 0 1.561 1.561
11 75 80 34 61 61 28 18 100 100 21 69 69 15 50 0.452 0.613 1.241 1.166 3.153 10.873 0.012 0 0.452 0.452
12 79 85 42 61 61 27 16 91 96 21 69 69 13 41 0.818 0.889 1.25 1.47 2.954 7.158 0.043 0 0.818 0.818
13 79 83 36 61 61 24 20 121 129 37 69 69 10 87 0.346 0.367 0.632 0.496 3.106 0.759 0.06 0 0.346 0.346
14 64 69 27 61 61 25 8 76 77 12 69 69 9 17 0.429 1 1.727 1.666 3.419 37.77 0.004 -50 0.429
15 154 166 82 61 61 25 71 107 110 26 69 69 9 80 2.447 2.561 2.531 2.305 3.154 4.613 0.325 0 2.447 2.447
16 79 81 36 61 61 23 15 72 73 11 69 69 9 10 6 5 3.355 2.634 3.597 74.294 0.001 -50 6
17 62 65 25 61 61 24 7 68 68 9 69 69 9 4 -1 -4 2.095 2.427 3.956 0.003 0 -50 -1
18 59 64 23 61 61 22 5 68 68 9 69 69 8 3 2 -3 2.083 2.276 2.729 70.583 0.001 -50 2
19 157 166 68 61 61 36 66 136 137 25 69 69 20 90 1.433 1.544 1.482 1.288 2.408 3.816 0.228 0 1.433 1.433
20 250 269 114 61 61 38 96 447 483 179 69 69 34 100 0.5 0.502 0.503 0.481 1.614 0.513 0.647 0 0.5 0.5

Total number of rows: 6819

Table truncated, full table size 675 Kbytes.




Supplementary data files not provided

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