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Sample GSM84676 Query DataSets for GSM84676
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 24 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 24 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 243 261 94 53 53 13 100 157 175 52 98 98 12 91 3.220 2.701 3.066 2.985 1.853 3.469 0.463 0 3.220 3.220
2 45 48 16 53 53 13 3 98 98 11 98 98 12 2 100000.000 100000.000 1.425 1.559 3.528 5.696 0.004 -100 100000.000
3 59 66 26 53 53 13 17 149 161 52 98 98 12 76 0.118 0.206 0.333 0.268 3.789 0.233 0.148 0 0.118 0.118
4 1331 1512 630 53 53 13 100 755 836 323 98 98 12 100 1.945 1.977 1.923 1.993 1.769 2.524 0.599 0 1.945 1.945
5 175 191 76 53 53 14 98 164 168 36 98 98 12 90 1.848 1.971 1.866 1.947 2.216 2.667 0.441 0 1.848 1.848
6 50 54 19 53 53 15 5 99 100 15 98 98 13 7 -3.000 0.500 1.417 1.325 3.461 4.390 0.101 -50 -3.000
7 117 124 55 53 53 17 76 526 559 236 98 98 15 100 0.150 0.154 0.159 0.144 1.948 0.177 0.488 0 0.150 0.150
8 378 482 293 53 53 14 100 467 577 245 98 98 13 100 0.881 0.896 0.870 0.830 1.686 1.256 0.439 0 0.881 0.881
9 99 112 56 53 53 12 76 144 157 50 98 98 12 85 1.000 1.000 0.939 0.987 2.353 1.231 0.355 0 1.000 1.000
10 135 171 112 53 53 14 86 162 183 68 98 98 13 86 1.281 1.388 1.207 1.235 2.438 1.917 0.522 0 1.281 1.281
11 69 73 28 53 53 14 25 120 125 24 98 98 14 41 0.727 0.741 0.718 0.795 3.596 1.180 0.231 0 0.727 0.727
12 111 129 66 53 53 12 75 155 165 53 98 98 12 75 1.018 1.134 1.118 1.123 3.216 1.305 0.324 0 1.018 1.018
13 154 191 101 53 53 12 96 272 337 170 98 98 12 99 0.580 0.577 0.558 0.556 2.601 0.438 0.385 0 0.580 0.580
14 123 145 74 53 53 13 85 141 150 48 98 98 12 69 1.628 1.769 1.688 1.630 3.160 2.783 0.251 0 1.628 1.628
15 546 779 554 53 53 13 100 166 215 116 98 98 12 81 7.250 6.205 6.301 7.238 2.175 7.946 0.512 0 7.250 7.250
16 149 159 52 53 53 13 98 115 114 17 98 98 12 27 5.647 6.625 4.731 5.352 2.055 8.556 0.178 0 5.647 5.647
17 54 58 18 53 53 13 9 94 94 16 98 98 13 3 -0.250 -1.250 0.833 0.908 4.009 0.853 0.016 -50 -0.250
18 48 52 16 53 53 14 5 94 97 18 98 98 15 3 1.250 1.000 0.903 0.919 3.209 0.152 0.002 -50 1.250
19 48 49 13 53 53 14 2 99 100 13 98 98 15 0 -5.000 -2.000 1.162 1.213 3.366 0.763 0.008 -50 -5.000
20 49 50 14 53 53 13 3 100 100 14 98 98 13 4 -2.000 -1.500 1.000 1.006 3.569 0.997 0.022 -50 -2.000

Total number of rows: 6979

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided

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