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Sample GSM84679 Query DataSets for GSM84679
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 27 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 27 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 282 312 126 57 57 14 100 158 166 47 100 100 12 84 3.879 3.864 3.678 3.924 1.799 3.825 0.655 0 3.879 3.879
2 45 48 16 57 57 14 2 86 87 12 100 100 15 0 0.857 0.692 1.000 0.928 2.998 2.542 0.031 -50 0.857
3 80 85 31 57 57 15 42 195 213 72 100 100 15 96 0.242 0.248 0.267 0.246 2.935 0.304 0.423 0 0.242 0.242
4 2019 2131 1218 57 57 14 100 767 755 370 100 100 13 100 2.942 3.166 3.055 3.299 1.431 3.402 0.843 0 2.942 2.942
5 400 406 125 57 57 14 100 197 202 41 100 100 16 95 3.536 3.422 3.270 3.521 1.697 3.526 0.720 0 3.536 3.536
6 87 94 36 57 57 15 49 112 113 23 100 100 16 18 2.500 2.846 1.830 1.970 3.616 2.243 0.274 0 2.500 2.500
7 201 256 194 57 57 15 83 537 686 532 100 100 17 99 0.330 0.340 0.291 0.315 2.159 0.323 0.768 0 0.330 0.330
8 567 771 520 57 57 13 100 552 657 346 100 100 12 100 1.128 1.282 1.156 1.232 1.584 1.529 0.687 0 1.128 1.128
9 138 139 44 57 57 13 90 144 150 31 100 100 11 82 1.841 1.640 1.607 1.657 2.378 1.711 0.514 0 1.841 1.841
10 220 239 144 57 57 15 85 211 215 95 100 100 13 77 1.468 1.583 1.503 1.636 2.299 1.667 0.737 0 1.468 1.468
11 110 112 39 57 57 15 70 121 127 28 100 100 13 43 2.524 2.037 1.765 1.763 2.870 1.967 0.438 0 2.524 2.524
12 155 176 85 57 57 13 97 153 167 51 100 100 11 84 1.849 1.776 1.750 1.886 2.368 1.824 0.622 0 1.849 1.849
13 193 209 94 57 57 13 96 262 295 115 100 100 11 100 0.840 0.779 0.723 0.745 1.899 0.766 0.697 0 0.840 0.840
14 149 177 99 57 57 14 89 131 138 38 100 100 33 20 2.968 3.158 2.615 2.996 2.655 3.638 0.452 0 2.968 2.968
15 931 1080 520 57 57 15 100 213 235 79 100 100 14 96 7.735 7.578 7.121 7.847 1.654 8.176 0.739 0 7.735 7.735
16 299 297 74 57 57 14 100 118 118 17 100 100 12 35 13.444 13.333 11.396 12.919 2.144 8.919 0.472 0 13.444 13.444
17 87 89 28 57 57 13 57 85 87 15 100 100 10 1 -2.000 -2.462 2.250 1.885 3.465 11.683 0.025 0 -2.000 -2.000
18 55 59 19 57 57 13 12 83 82 12 100 100 11 0 0.118 -0.111 0.542 0.551 3.612 0.094 0.006 -50 0.118
19 49 50 13 57 57 99 0 86 87 10 100 100 52 0 0.571 0.538 0.784 0.726 2.886 0.146 0.082 -50 0.571
20 49 51 14 57 57 96 0 88 88 12 100 100 50 0 0.667 0.500 0.942 0.897 3.181 0.063 0.001 -50 0.667

Total number of rows: 6979

Table truncated, full table size 742 Kbytes.




Supplementary data files not provided

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