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Sample GSM84682 Query DataSets for GSM84682
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 30 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 30 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 226 254 121 54 54 14 99 158 166 40 103 103 12 89 3.127 3.175 3.187 3.244 1.767 3.195 0.589 0 3.127 3.127
2 46 48 14 54 54 14 2 101 102 12 103 103 13 1 4.000 6.000 1.400 1.298 3.739 6.726 0.000 -50 4.000
3 77 84 35 54 54 14 43 162 172 46 103 103 13 82 0.390 0.435 0.508 0.448 3.029 0.517 0.392 0 0.390 0.390
4 3153 3340 950 54 54 14 100 858 920 249 103 103 13 100 4.105 4.022 4.220 4.009 1.359 4.155 0.819 0 4.105 4.105
5 343 350 92 54 54 14 100 184 185 33 103 103 13 97 3.568 3.610 3.672 3.734 1.594 3.982 0.660 0 3.568 3.568
6 61 64 26 54 54 14 22 103 104 16 103 103 13 5 100000.000 10.000 1.600 1.538 4.386 0.022 0.000 -100 100000.000
7 174 182 70 54 54 14 98 466 524 197 103 103 13 100 0.331 0.304 0.321 0.281 1.848 0.256 0.606 0 0.331 0.331
8 382 425 209 54 54 13 98 420 445 163 103 103 14 98 1.035 1.085 1.135 1.034 1.738 1.122 0.721 0 1.035 1.035
9 92 96 31 54 54 14 63 121 121 20 103 103 101 0 2.111 2.333 1.862 2.127 3.188 0.014 0.002 0 2.111 2.111
10 178 184 63 54 54 13 96 180 183 36 103 103 111 0 1.610 1.625 1.600 1.586 1.936 0.204 0.061 0 1.610 1.610
11 73 78 25 54 54 14 38 121 124 24 103 103 14 35 1.056 1.143 1.344 1.228 3.316 1.296 0.187 0 1.056 1.056
12 112 118 48 54 54 14 80 136 140 35 103 103 14 54 1.758 1.730 1.899 2.048 3.887 2.026 0.238 0 1.758 1.758
13 135 154 72 54 54 14 91 227 251 87 103 103 13 100 0.653 0.676 0.701 0.600 2.382 0.624 0.513 0 0.653 0.653
14 104 111 50 54 54 13 72 109 114 21 103 103 12 22 8.333 5.182 2.923 3.011 3.060 4.842 0.176 0 8.333 8.333
15 504 597 272 54 54 14 100 155 162 44 103 103 13 79 8.654 9.203 9.077 10.309 1.791 8.718 0.567 0 8.654 8.654
16 191 190 50 54 54 19 96 102 103 15 103 103 14 4 -137.000 100000.000 8.500 10.402 2.315 81.848 0.004 0 -137.000 -137.000
17 61 65 32 54 54 23 5 99 99 17 103 103 27 0 -1.750 -2.750 1.117 1.080 3.728 1.024 0.139 -50 -1.750
18 53 55 17 54 54 23 1 89 90 21 103 103 28 0 0.071 -0.077 0.610 0.620 3.643 3.314 0.017 -50 0.071
19 50 52 15 54 54 20 1 100 101 12 103 103 15 1 1.333 1.000 1.333 1.306 3.155 2.535 0.017 -50 1.333
20 57 64 28 54 54 42 2 111 118 32 103 103 33 5 0.375 0.667 0.923 1.005 3.661 1.258 0.393 -50 0.375

Total number of rows: 6979

Table truncated, full table size 740 Kbytes.




Supplementary data files not provided

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