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Sample GSM84683 Query DataSets for GSM84683
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 31 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 31 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 411 438 170 62 62 14 99 187 194 51 102 102 12 95 4.106 4.087 4.368 4.283 1.552 3.911 0.833 0 4.106 4.106
2 47 49 14 62 62 13 1 94 94 11 102 102 12 0 1.875 1.625 1.500 1.488 3.034 4.273 0.010 -50 1.875
3 123 129 56 62 62 113 0 192 206 69 102 102 21 89 0.678 0.644 0.661 0.639 2.512 0.705 0.635 0 0.678 0.678
4 5385 6037 2270 62 62 284 100 1095 1179 348 102 102 48 100 5.361 5.548 5.373 5.480 1.149 5.783 0.961 0 5.361 5.361
5 714 720 262 62 62 203 82 217 219 53 102 102 42 71 5.670 5.624 5.541 5.784 1.559 5.491 0.853 0 5.670 5.670
6 130 139 57 62 62 15 80 114 117 21 102 102 12 25 5.667 5.133 3.866 3.459 3.168 5.200 0.196 0 5.667 5.667
7 282 372 271 62 62 15 91 658 846 531 102 102 13 99 0.396 0.417 0.394 0.369 1.680 0.443 0.881 0 0.396 0.396
8 875 1132 673 62 62 14 100 610 717 329 102 102 14 100 1.600 1.740 1.679 1.653 1.297 1.881 0.910 0 1.600 1.600
9 166 175 52 62 62 18 94 137 142 29 102 102 14 55 2.971 2.825 2.885 3.098 2.407 2.868 0.509 0 2.971 2.971
10 264 301 118 62 62 22 96 209 225 54 102 102 16 100 1.888 1.943 1.969 1.755 2.008 2.277 0.799 0 1.888 1.888
11 124 129 52 62 62 16 71 118 124 29 102 102 13 37 3.875 3.045 2.517 2.497 3.451 3.067 0.341 0 3.875 3.875
12 177 204 89 62 62 16 98 148 159 47 102 102 12 74 2.500 2.491 2.514 2.844 2.442 2.428 0.668 0 2.500 2.500
13 192 218 95 62 62 14 98 263 287 110 102 102 12 100 0.807 0.843 0.842 0.820 1.699 0.834 0.800 0 0.807 0.807
14 156 191 102 62 62 17 90 121 124 27 102 102 22 19 4.947 5.864 4.895 4.862 2.679 4.620 0.459 0 4.947 4.947
15 1064 1272 675 62 62 19 100 174 196 68 102 102 15 87 13.917 12.872 13.343 14.057 1.531 12.316 0.799 0 13.917 13.917
16 269 284 100 62 62 16 98 99 100 14 102 102 11 4 -69.000 -111.000 21.093 19.919 1.991 35.229 0.078 0 -69.000 -69.000
17 88 90 33 62 62 17 34 81 83 15 102 102 12 0 -1.238 -1.474 0.784 1.169 6.448 0.151 0.057 0 -1.238 -1.238
18 70 73 26 62 62 27 5 88 90 19 102 102 43 0 -0.571 -0.917 0.875 0.892 4.373 16.041 0.004 -50 -0.571
19 60 65 23 62 62 27 3 103 107 19 102 102 47 0 -2.000 0.600 1.571 1.573 3.776 0.199 0.068 -50 -2.000
20 56 57 17 62 62 19 1 100 101 14 102 102 39 0 3.000 5.000 1.250 1.385 3.114 0.289 0.094 -50 3.000

Total number of rows: 6979

Table truncated, full table size 749 Kbytes.




Supplementary data files not provided

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