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Sample GSM84687 Query DataSets for GSM84687
Status Public on Dec 01, 2005
Title Yeast Stationary phase culture, (Replicate) time 35 min.
Sample type RNA
 
Channel 1
Source name Yeast stationary phase culture
Organism Saccharomyces cerevisiae
Characteristics Yeast Stationary phase culture, time 35 min
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name Yeast stationary phase and Exponental mix 1:1
Organism Saccharomyces cerevisiae
Characteristics As a control Yeast stationary phase and Exponental mix 1:1
Extracted molecule total RNA
Label Cy3
 
 
Description As a control Yeast stationary phase and Exponental mix 1:1
Data processing After background correction based on negative controls and removal of flaged valuse, data was normalized to Arabidopsis thaliana controls.
 
Submission date Nov 22, 2005
Last update date Nov 30, 2005
Contact name Sushmita Roy
E-mail(s) sroy@cs.unm.edu
Phone 5052779340
Organization name Biology, University of New Mexico
Street address
City Albuquerque
State/province NM
ZIP/Postal code 87106
Country USA
 
Platform ID GPL1859
Series (2)
GSE3688 Oxidative Stress 1-min interval
GSE3729 Oxidative stress in stationary-phase cultures

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
B635 Median
B635 Mean
B635 SD
% > B635+2SD
F532 Median
F532 Mean
F532 SD
B532 Median
B532 Mean
B532 SD
% > B532+2SD
Ratio of Medians (635/532)
Ratio of Means (635/532)
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
Flags
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE

Data table
ID_REF F635 Median F635 Mean F635 SD B635 Median B635 Mean B635 SD % > B635+2SD F532 Median F532 Mean F532 SD B532 Median B532 Mean B532 SD % > B532+2SD Ratio of Medians (635/532) Ratio of Means (635/532) Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) Flags VALUE UNF_VALUE
1 118 173 140 54 54 115 17 155 171 46 96 96 498 0 1.085 1.587 1.261 1.116 2.892 3.907 0.376 0 1.085 1.085
2 69 72 25 54 54 101 0 164 168 39 96 96 438 0 0.221 0.250 0.271 0.260 2.656 0.219 0.891 -50 0.221
3 67 78 35 54 54 19 24 157 165 36 96 96 35 38 0.213 0.348 0.398 0.343 2.712 0.706 0.200 0 0.213 0.213
4 1813 2036 810 54 54 17 100 540 573 184 96 96 31 100 3.962 4.155 3.804 4.145 1.456 5.003 0.804 0 3.962 3.962
5 245 250 71 54 54 18 100 149 149 26 96 96 17 76 3.604 3.698 3.716 3.665 1.706 7.322 0.297 0 3.604 3.604
6 65 69 24 54 54 17 15 114 114 19 96 96 18 15 0.611 0.833 1.067 1.002 3.903 0.277 0.018 -50 0.611
7 123 147 88 54 54 20 68 301 360 203 96 96 28 95 0.337 0.352 0.309 0.318 2.547 0.353 0.559 0 0.337 0.337
8 269 307 135 54 54 248 4 298 320 92 96 96 1239 0 1.064 1.129 1.080 1.058 1.503 1.712 0.704 0 1.064 1.064
9 60 66 23 54 54 198 0 150 153 22 96 96 976 0 0.111 0.211 0.311 0.272 3.431 0.098 0.002 -50 0.111
10 138 162 136 54 54 27 66 232 285 475 96 96 30 83 0.618 0.571 0.650 0.612 2.255 0.271 0.676 0 0.618 0.618
11 80 86 43 54 54 691 0 184 204 216 96 96 394 0 0.295 0.296 0.371 0.323 2.664 3.114 0.679 -50 0.295
12 92 107 93 54 54 708 0 187 201 74 96 96 583 0 0.418 0.505 0.482 0.427 2.863 0.433 0.547 -50 0.418
13 116 129 60 54 54 265 0 244 253 100 96 96 1648 0 0.419 0.478 0.429 0.421 2.173 0.138 0.727 0 0.419 0.419
14 74 86 45 54 54 197 0 174 187 108 96 96 1234 0 0.256 0.352 0.409 0.334 2.876 0.139 0.808 -50 0.256
15 233 295 168 54 54 16 100 140 145 28 96 96 18 59 4.068 4.918 4.577 4.790 1.919 12.576 0.316 0 4.068 4.068
16 72 84 38 54 54 18 34 116 120 22 96 96 22 13 0.900 1.250 1.400 1.301 4.228 2.586 0.024 -50 0.900
17 56 60 20 54 54 18 8 108 109 18 96 96 24 4 0.167 0.462 1.000 0.971 3.761 0.328 0.066 -50 0.167
18 60 68 71 54 54 15 16 104 110 41 96 96 16 17 0.750 1.000 0.750 0.779 4.367 3.253 0.137 -50 0.750
19 52 56 17 54 54 14 8 107 109 24 96 96 13 13 -0.182 0.154 1.000 1.082 4.015 0.188 0.004 -50 -0.182
20 50 51 12 54 54 39 0 103 103 15 96 96 34 0 -0.571 -0.429 0.867 0.791 3.233 1.193 0.515 -50 -0.571

Total number of rows: 6979

Table truncated, full table size 721 Kbytes.




Supplementary data files not provided
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