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Sample GSM848 Query DataSets for GSM848
Status Public on Feb 12, 2002
Title YPD 3 d (25C)
Sample type RNA
 
Channel 1
Source name t=0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 3 d
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a78
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 59 50 47 55 18 44 37 36 18 54 .457 0 -1.415 .527 55 31 2.611 2.667 .383 .375 .62 1164 177 92 107 119 134 -1.415
2 59 48 227 259 224 43 35 34 219 254 .91 0 -.05 1.043 59 74 1.013 1.035 .987 .966 .784 928 177 92 107 137 152 -.05
3 68 46 13 46 10 64 36 35 10 45 .411 0 -.409 1.148 28 28 1.3 1.328 .769 .753 .362 928 177 92 107 154 169 -.409
4 65 46 277 295 259 65 36 35 254 289 .937 0 -.128 1.049 45 60 1.069 1.092 .935 .915 .803 950 177 92 107 172 187 -.128
5 55 46 1166 1737 1701 44 36 35 1665 1700 .955 0 .514 1.548 90 95 .685 .7 1.459 1.428 1.298 928 177 92 107 190 205 .514
6 51 44 340 603 570 40 33 32 558 590 .94 0 .715 1.567 46 55 .596 .609 1.676 1.641 1.529 928 177 92 107 207 222 .715
7 55 44 10 34 39 35 34 -1 33 .042 -100 .528 33 20 .03 950 177 92 107 225 240
8 57 46 14 42 7 40 35 34 7 41 .164 -100 .75 33 31 2 2.043 .5 .489 .139 896 177 93 108 243 258 -1.031
9 52 43 4 41 5 41 36 35 5 40 .131 -100 .912 22 31 .8 .817 1.25 1.224 .111 896 177 93 108 260 275 .291
10 53 42 3 33 45 34 33 -1 32 .097 -100 .926 22 19 .077 919 177 93 108 278 293
11 53 43 7 35 2 45 33 32 2 34 .151 -100 .536 31 22 3.5 3.575 .286 .28 .124 896 177 93 108 296 311 -1.838
12 53 44 3 32 39 34 33 -2 31 .082 -100 .813 24 17 .07 896 177 93 108 313 328
13 52 43 5 33 39 34 33 -1 32 .177 -100 .917 24 19 .141 919 177 93 108 331 346
14 54 42 33 40 33 32 0 32 -.013 -100 1.364 20 27 -.011 896 177 93 108 349 364
15 57 43 38 4 42 34 33 4 37 -.044 -100 1.273 15 25 -.043 896 177 93 108 366 381
16 49 41 2 35 1 42 34 33 1 34 -.045 -100 .867 23 24 2 2.043 .5 .489 -.041 919 177 93 108 384 399 -1.031
17 46 40 15 39 7 38 32 31 7 38 .484 -100 1.105 33 30 2.143 2.189 .467 .457 .305 896 177 93 108 402 417 -1.13
18 50 40 22 38 9 35 29 28 9 37 .418 -100 .65 36 33 2.444 2.497 .409 .4 .168 905 177 93 108 419 434 -1.32
19 52 40 7 37 6 37 31 30 6 36 -.065 0 -.253 .757 27 31 1.167 1.192 .857 .839 -.053 941 177 93 108 437 452 -.253
20 45 39 3 32 2 36 30 29 2 31 .234 -100 .493 27 23 1.5 1.532 .667 .653 .174 937 177 93 108 455 470 -.616

Total number of rows: 9216

Table truncated, full table size 1078 Kbytes.




Supplementary data files not provided
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