|
Status |
Public on Sep 11, 2024 |
Title |
Cerebellar Control stage 41 sample 4 |
Sample type |
SRA |
|
|
Source name |
Hindbrain Rh_1 dissected
|
Organism |
Xenopus laevis |
Characteristics |
tissue: Hindbrain Rh_1 dissected cell line: stage 41 cell type: cerebellar primordium genotype: Xenla9.2 treatment: Injected Morpholino (MO) Control (Ct)
|
Treatment protocol |
Dissected rhombomere 1 stage 41
|
Growth protocol |
Xenopus tadpole grown in 0.3X MMR
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol (ambion) RNA extraction Stranded mRNA prep Ligation-Illumina
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq X |
|
|
Data processing |
feature Counts V2.0.1 Assembly: X. laevis v10.1 Supplementary files format and content: tab-delimated text file includes raw counts for each sample
|
|
|
Submission date |
Sep 10, 2024 |
Last update date |
Sep 11, 2024 |
Contact name |
Mohamed Doulazmi |
E-mail(s) |
mohamed.doulazmi@upmc.fr
|
Phone |
33144273508
|
Organization name |
Sorbonne Unversity
|
Department |
Neurocsiences
|
Street address |
9 quai St Bernard
|
City |
Paris |
State/province |
Paris |
ZIP/Postal code |
75005 |
Country |
France |
|
|
Platform ID |
GPL34884 |
Series (1) |
GSE276791 |
Role of barhl1 in amphbian cerebellum |
|
Relations |
BioSample |
SAMEA114093857 |
SRA |
ERX11139199 |