|
Status |
Public on Jul 01, 2012 |
Title |
RenLab-H3K27ac-testis |
Sample type |
SRA |
|
|
Source name |
Mouse testis
|
Organism |
Mus musculus |
Characteristics |
strain: C57Bl/6 antibody: Active motif, 39133
|
Treatment protocol |
None
|
Extracted molecule |
genomic DNA |
Extraction protocol |
See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina HiSeq 2000 |
|
|
Description |
H3K27ac IP
|
Data processing |
fastq: Illumina's Genome Analyzer Pipeline bowtie files: Alignment to mm9 using Bowtie with a seed length of 32 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept. ELAND files: Alignment to mm9 using ELAND with a seed length of 25 bases and up to 2 mismatches. Only sequences mapping to exactly one location were kept.
|
|
|
Submission date |
Dec 20, 2011 |
Last update date |
May 15, 2019 |
Contact name |
Bing Ren |
E-mail(s) |
biren@ucsd.edu
|
Organization name |
University of California, San Diego
|
Street address |
9500 Gilman Drive
|
City |
La Jolla |
State/province |
CA |
ZIP/Postal code |
92093 |
Country |
USA |
|
|
Platform ID |
GPL13112 |
Series (2) |
GSE29184 |
A draft map of cis-regulatory sequences in the mouse genome |
GSE29218 |
A draft map of cis-regulatory sequences in the mouse genome [ChIP-Seq] |
|
Relations |
SRA |
SRX112976 |
BioSample |
SAMN00768150 |