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Sample GSM852 Query DataSets for GSM852
Status Public on Feb 12, 2002
Title alpha factor release sample026
Sample type RNA
 
Channel 1
Source name asynchrnous control (prep3)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 26
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.03 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n52
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL60
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 286 288 206 762 343 426 419 361 296 657 .896 0 .523 1.667 13 15 .601 .696 1.665 1.437 1.414 1204 69 40 51 52 63
2 279 280 273 803 404 403 399 344 348 692 .823 0 .35 1.125 21 23 .676 .784 1.48 1.275 1.156 1050 69 39 50 62 73
3 277 280 545 1199 810 395 389 335 699 1034 .924 0 .359 1.563 31 34 .673 .78 1.486 1.283 1.349 964 69 39 50 72 83
4 274 272 45 438 49 390 389 335 43 378 .78 0 -.066 1.09 14 11 .918 1.047 1.089 .956 .841 955 69 39 50 82 93
5 273 272 71 572 183 388 389 335 158 493 .839 0 1.154 2.361 18 26 .388 .449 2.577 2.225 2.108 950 69 39 50 92 103
6 270 272 36 443 54 388 389 335 47 382 .692 0 .385 1.458 8 8 .667 .766 1.5 1.306 .805 950 69 39 50 102 113
7 271 272 116 500 111 388 389 335 96 431 .859 0 -.273 .938 27 24 1.045 1.208 .957 .828 .883 950 69 39 50 112 123
8 272 272 197 561 172 388 389 335 149 484 .875 0 -.403 .907 33 27 1.145 1.322 .873 .756 .768 950 69 39 50 122 133
9 274 272 33 410 21 387 389 335 18 353 .624 0 -.874 1.154 10 2 1.571 1.833 .636 .545 .524 950 69 39 50 132 143
10 275 272 69 451 62 387 389 335 54 389 .895 0 -.354 .875 17 14 1.113 1.278 .899 .783 .803 950 69 39 50 142 153
11 275 272 70 443 54 384 389 335 47 382 .789 0 -.575 1.094 17 13 1.296 1.489 .771 .671 .767 950 69 39 50 152 163
12 277 280 70 429 40 383 389 335 35 370 .789 0 -1 .878 17 11 1.75 2 .571 .5 .678 950 69 39 50 162 173
13 276 280 383 4 382 379 327 3 330 .137 0 1.875 0 0 .216 950 69 39 50 172 183
14 283 280 49 437 58 388 379 327 50 377 .886 0 .029 1.25 7 5 .845 .98 1.184 1.02 .918 950 69 39 50 182 193
15 285 280 119 515 136 390 379 327 117 444 .801 0 -.024 .759 15 18 .875 1.017 1.143 .983 .892 950 69 39 50 192 203
16 285 280 40 438 59 391 379 327 51 378 .679 0 .35 .833 5 10 .678 .784 1.475 1.275 .731 950 69 39 50 202 213
17 286 280 32 424 45 412 379 327 39 366 .723 0 .285 .833 11 13 .711 .821 1.406 1.219 .723 950 69 39 50 212 223
18 281 280 17 381 2 404 379 327 1 328 .297 0 -4.087 1.154 1 0 8.5 17 .118 .059 .364 950 69 39 50 222 233
19 280 280 24979 447 68 404 379 327 58 385 0 0 -8.75 .004 84 11 367.338 430.672 .003 .002 0 950 69 39 50 232 243
20 280 280 259 1397 1018 403 379 327 877 1204 .685 0 1.76 2.679 47 59 .254 .295 3.931 3.386 3.555 950 69 39 50 242 253

Total number of rows: 7680

Table truncated, full table size 865 Kbytes.




Supplementary data files not provided
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