NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM856091 Query DataSets for GSM856091
Status Public on Jan 22, 2013
Title Vaginal swab 4
Sample type RNA
 
Source name Human vaginal swab
Organism Homo sapiens
Characteristics physiological specimen: Vaginal swab
ethnic group: Korean
gender: female
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit or QIAGEN RNeasy Protect Saliva mini kit (saliva) in accordance with the prescribed protocol provided with the kit. Quality control was performed with Experion (BIO-RAD).
Label biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 04, 2012
Last update date Jan 22, 2013
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL14951
Series (1)
GSE34844 Genome-wide mRNA profiling for identification of specific body fluid markers

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 396.0138 0.1042471
ILMN_2055271 279.5903 0.6563706
ILMN_2383229 363.4837 0.1853282
ILMN_1806310 229.4703 0.9498069
ILMN_1779670 369.0116 0.1544401
ILMN_1717783 583.2012 0
ILMN_1814316 296.1783 0.5714286
ILMN_2359168 343.9242 0.2779923
ILMN_1731507 333.0013 0.3590734
ILMN_1787689 344.3657 0.2779923
ILMN_3241953 314.1098 0.4517375
ILMN_1745607 379.7894 0.1467181
ILMN_2136495 462.5824 0.04633205
ILMN_1668111 229.3874 0.9498069
ILMN_2295559 261.1023 0.7992278
ILMN_1735045 644.9202 0
ILMN_1680754 183.2898 1
ILMN_2375184 363.2342 0.1930502
ILMN_1659452 360.4406 0.1930502
ILMN_1767388 349.7121 0.2432432

Total number of rows: 29377

Table truncated, full table size 867 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.