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Sample GSM856092 Query DataSets for GSM856092
Status Public on Jan 22, 2013
Title Vaginal swab 5
Sample type RNA
 
Source name Human vaginal swab
Organism Homo sapiens
Characteristics physiological specimen: Vaginal swab
ethnic group: Korean
gender: female
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit or QIAGEN RNeasy Protect Saliva mini kit (saliva) in accordance with the prescribed protocol provided with the kit. Quality control was performed with Experion (BIO-RAD).
Label biotin
Label protocol Illumina TotalPrep RNA Amplification kit (Ambion)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 5
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 04, 2012
Last update date Jan 22, 2013
Contact name Seon-Young Kim
E-mail(s) kimsy@kribb.re.kr
Phone 82-42-879-8116
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Genome Research Center
Lab Human Genomics
Street address 52 Eoeun-dong, Yuseong-gu
City Daejon
ZIP/Postal code 305333
Country South Korea
 
Platform ID GPL14951
Series (1)
GSE34844 Genome-wide mRNA profiling for identification of specific body fluid markers

Data table header descriptions
ID_REF
VALUE quantile normalized signal
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1762337 392.9884 0.1350365
ILMN_2055271 266.7731 0.7846715
ILMN_2383229 290.1694 0.5985401
ILMN_1806310 258.3214 0.8175182
ILMN_1779670 378.2989 0.1715328
ILMN_1717783 273.4558 0.7335767
ILMN_1814316 253.1953 0.8357664
ILMN_2359168 348.5596 0.2919708
ILMN_1731507 265.978 0.7846715
ILMN_1787689 354.9499 0.2554744
ILMN_3241953 316.9114 0.4379562
ILMN_1745607 515.5487 0
ILMN_2136495 2959.258 0
ILMN_1668111 293.8369 0.5766423
ILMN_2295559 294.9638 0.5693431
ILMN_1735045 1212.921 0
ILMN_1680754 154.157 1
ILMN_2375184 321.0576 0.4160584
ILMN_1659452 370.3472 0.1934307
ILMN_1767388 470.196 0.01824817

Total number of rows: 29377

Table truncated, full table size 864 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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