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Sample GSM858 Query DataSets for GSM858
Status Public on Feb 12, 2002
Title alpha factor release sample020
Sample type RNA
 
Channel 1
Source name asynchrnous control (prep3)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 20
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n32
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 279 280 51 373 37 336 336 454 50 504 .888 0 -.029 1 10 8 1.378 1.02 .725 .98 .787 1150 80 28 38 34 44 -.029
2 276 280 210 493 165 330 328 443 223 666 .778 0 .087 .875 33 30 1.273 .942 .786 1.062 .628 940 80 28 38 44 54 .087
3 272 272 80 400 72 324 328 443 98 541 .713 0 .293 1.045 18 18 1.111 .816 .9 1.225 .679 830 80 28 38 54 64 .293
4 269 272 31 337 17 318 320 432 23 455 .528 0 -.431 1 11 7 1.824 1.348 .548 .742 .636 820 80 28 38 64 74 -.431
5 267 272 133 547 235 314 312 422 317 739 .837 0 1.253 1.846 30 45 .566 .42 1.767 2.383 1.316 815 80 28 38 74 84 1.253
6 268 272 7 308 311 312 422 416 .188 0 1.25 0 0 .194 815 80 28 38 84 94
7 268 272 125 387 83 308 304 411 112 523 .843 0 -.158 .722 28 17 1.506 1.116 .664 .896 .652 815 80 28 38 94 104 -.158
8 266 264 216 416 112 305 304 411 151 562 .894 0 -.516 .51 47 36 1.929 1.43 .519 .699 .469 815 80 28 38 104 114 -.516
9 266 264 15 314 10 303 304 411 13 424 .202 0 -.206 .75 3 3 1.5 1.154 .667 .867 .19 815 80 28 38 114 124 -.206
10 266 264 305 1 301 304 411 1 412 .216 0 1 2 0 .193 815 80 28 38 124 134
11 265 264 8 308 4 300 304 411 5 416 .171 0 -.678 1 0 2 2 1.6 .5 .625 .239 815 80 28 38 134 144 -.678
12 267 264 9 308 4 299 304 411 5 416 .002 0 -.848 .667 0 0 2.25 1.8 .444 .556 .002 815 80 28 38 144 154 -.848
13 269 272 1 295 299 296 400 399 .054 0 .8 0 0 .06 815 80 28 38 154 164
14 272 272 168 435 139 300 296 400 188 588 .821 0 .162 .803 27 23 1.209 .894 .827 1.119 .702 815 80 28 38 164 174 .162
15 275 272 230 482 186 301 296 400 251 651 .892 0 .126 .833 30 28 1.237 .916 .809 1.091 .778 815 80 28 38 174 184 .126
16 274 272 159 428 124 302 304 411 167 578 .925 0 .071 .667 13 13 1.282 .952 .78 1.05 .622 850 80 27 37 184 194 .071
17 277 272 18 306 10 304 296 400 14 414 .405 0 -.363 1 2 1 1.8 1.286 .556 .778 .336 840 80 27 37 194 204 -.363
18 276 272 288 301 296 400 389 .009 0 1.167 0 0 .009 830 80 27 37 204 214
19 273 264 5637 318 22 297 296 400 30 430 0 0 -7.554 .01 55 6 256.227 187.9 .004 .005 0 820 80 27 37 214 224 -7.554
20 273 264 69 468 172 296 296 400 232 632 .571 0 1.749 2.474 22 37 .401 .297 2.493 3.362 1.785 815 80 27 37 224 234 1.749

Total number of rows: 7680

Table truncated, full table size 896 Kbytes.




Supplementary data files not provided
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