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Sample GSM860331 Query DataSets for GSM860331
Status Public on Jul 01, 2014
Title Blood SCD patientA0192
Sample type RNA
 
Source name whole blood
Organism Homo sapiens
Characteristics age (years): 4.5
clinical status: A
severity score: 0.211
Sex: M
hb phenotype: SC
Extracted molecule total RNA
Extraction protocol RNA was extracted from whole blood collected in Tempus tubes using the Tempus Spin RNA Isolation kit (Applied Biosystems). Total RNA was then globin-mRNA-depleted using GlobinClear kit (Ambion). Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Illumina TotalPrep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Sample125
globin mRNA-depleted total RNA
Data processing The data was log2 transfromed and normalised using quantile normalisation with JMP Genomics
 
Submission date Jan 11, 2012
Last update date Jul 01, 2014
Contact name Jacklyn Quinlan
E-mail(s) jacki.quinlan@gmail.com
Phone 514-345-4931
Organization name CHU Ste-Justine Hospital
Department Pediatrics
Lab Philip Awadalla
Street address 3175 Cote Ste-Catherine
City Montreal
State/province Qc
ZIP/Postal code H3T 1C5
Country Canada
 
Platform ID GPL10558
Series (1)
GSE35007 The genomic architecture of sickle cell disease in children from West Africa

Data table header descriptions
ID_REF
VALUE quantile normalized signal
A0192Detection Pval

Data table
ID_REF VALUE A0192Detection Pval
ILMN_1762337 6.71682254 0.6506494
ILMN_2055271 7.32651837 0.00779221
ILMN_1736007 6.75229624 0.5857143
ILMN_2383229 6.85616319 0.3948052
ILMN_1806310 6.86341324 0.3818182
ILMN_1779670 6.57536784 0.8311688
ILMN_1653355 7.06571404 0.1
ILMN_1717783 6.41472962 0.9714286
ILMN_1705025 6.99378998 0.1701299
ILMN_1814316 6.787786 0.5155844
ILMN_2359168 6.54247397 0.8675325
ILMN_1731507 6.3942376 0.9818182
ILMN_1787689 6.60215253 0.8051948
ILMN_3241953 7.23207364 0.02337662
ILMN_1745607 6.42237352 0.9610389
ILMN_2136495 6.39791309 0.9792208
ILMN_1668111 6.89999686 0.312987
ILMN_2295559 6.98782141 0.1727273
ILMN_1735045 7.29176429 0.00779221
ILMN_1680754 7.01782968 0.1415584

Total number of rows: 47323

Table truncated, full table size 1516 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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