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Sample GSM863 Query DataSets for GSM863
Status Public on Feb 12, 2002
Title alpha factor release sample014
Sample type RNA
 
Channel 1
Source name asynchronous control
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 14
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.41 scanning software was used.
Keywords = Cell-cycle
Keywords = Alpha factor block-release
Lot batch = y744n98
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL59
Series (1)
GSE22 Alpha-factor block-release

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 300 288 128 371 75 309 296 493 125 618 .879 0 -.034 .686 11 12 1.707 1.024 .586 .977 .498 884 80 9 19 50 60 -.034
2 301 288 229 461 165 310 296 493 275 768 .939 0 .264 .824 15 21 1.388 .833 .721 1.201 .586 674 80 9 19 60 70 .264
3 305 288 195 427 131 318 296 493 219 712 .867 0 .167 1 16 23 1.489 .89 .672 1.123 .535 569 80 9 19 70 80 .167
4 296 288 45 397 101 307 296 493 169 662 .291 0 1.909 1.25 5 23 .446 .266 2.244 3.756 .682 569 80 9 19 80 90 1.909
5 299 296 224 522 226 314 296 493 377 870 .935 0 .751 .941 20 23 .991 .594 1.009 1.683 .898 569 80 9 19 90 100 .751
6 298 296 96 353 57 311 296 493 95 588 .652 0 -.015 .744 20 11 1.684 1.011 .594 .99 .601 569 80 9 19 100 110 -.015
7 298 296 73 335 39 310 296 493 65 558 .328 0 -.167 .5 16 11 1.872 1.123 .534 .89 .275 569 80 9 19 110 120 -.167
8 297 296 591 632 336 308 296 493 560 1053 .933 0 -.078 .573 63 57 1.759 1.055 .569 .948 .528 569 80 9 19 120 130 -.078
9 291 288 84 426 130 315 296 493 217 710 .445 0 1.369 1.167 10 13 .646 .387 1.548 2.583 1.124 569 80 9 19 130 140 1.369
10 293 288 70 341 53 313 288 480 88 568 .549 0 .33 .664 12 11 1.321 .795 .757 1.257 .563 569 80 9 19 140 150 .33
11 294 288 84 355 67 311 288 480 112 592 .666 0 .415 1 17 18 1.254 .75 .798 1.333 .42 569 80 9 19 150 160 .415
12 292 288 62 363 75 316 288 480 125 605 .508 0 1.012 .936 12 16 .827 .496 1.21 2.016 .774 569 80 9 19 160 170 1.012
13 292 288 3 325 37 305 288 480 62 542 .478 0 4.369 1 1 6 .081 .048 12.333 20.667 1.724 569 80 9 19 170 180 4.369
14 303 288 60 321 33 318 288 480 55 535 .899 0 -.126 1 10 7 1.818 1.091 .55 .917 .618 569 80 9 19 180 190 -.126
15 309 288 180 424 136 323 288 480 227 707 .936 0 .335 .864 17 23 1.324 .793 .756 1.261 .58 569 80 9 19 190 200 .335
16 310 296 199 453 165 317 288 480 275 755 .928 0 .467 .791 11 13 1.206 .724 .829 1.382 .642 569 80 9 19 200 210 .467
17 312 296 97 375 79 323 296 493 132 625 .748 0 .444 1.184 17 18 1.228 .735 .814 1.361 .622 569 80 8 18 210 220 .444
18 299 288 17 293 5 308 288 480 8 488 .175 0 -1.087 .778 3 2 3.4 2.125 .294 .471 .174 569 80 8 18 220 230 -1.087
19 294 288 9043 352 64 304 288 480 107 587 0 0 -6.401 .009 62 15 141.297 84.514 .007 .012 0 563 80 8 18 230 240 -6.401
20 296 288 188 604 316 305 288 480 527 1007 .809 0 1.487 1.5 35 46 .595 .357 1.681 2.803 1.472 553 80 8 18 240 250 1.487

Total number of rows: 7680

Table truncated, full table size 921 Kbytes.




Supplementary data files not provided
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