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GEO accession:
Sample GSM8647
Query DataSets for GSM8647
Status
Public on Jul 30, 2003
Title
AtRoot14DayMSTNT
Sample type
SAGE
Anchor
NlaIII
Tag Count
32203
Tag Length
10
Source name
Roots
Organism
Arabidopsis thaliana
Extracted molecule
total RNA
Description
14-day old seedlings grown submerged in MS medium and exposed 24 h to 0.0015% (v:v) DMSO and 15 mg/L TNT final concentration.
Keywords = phytoremediation, munitions, TNT, RDX, explosives
Submission date
Jul 25, 2003
Last update date
Nov 19, 2008
Contact name
Jeffrey F.D. Dean
E-mail(s)
jeffdean@uga.edu
Phone
1-706-542-1710
Fax
1-706-583-0881
Organization name
University of Georgia
Department
Warnell School of Forest Resources
Street address
City
Athens
State/province
GA
ZIP/Postal code
30602
Country
USA
Platform ID
GPL25
Series (1)
GSE560
AtSeedlingRootMunitionResponses
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GTGAGTTTGT
1047
32512.50
CGCCCGCCGC
539
16737.57
TGCAAGTTTG
317
9843.80
ATTTGCCAGA
259
8042.73
TGAGGTGATG
162
5030.59
CGGTGAAAAA
159
4937.43
GCTGTTTTTG
155
4813.22
AAAAAAAAAA
135
4192.16
AGGTCTTGGT
134
4161.10
GACCCGGTGA
112
3477.94
TAAAACTTTG
106
3291.62
AGAGTTTGTA
103
3198.46
TGATGAGTTT
94
2918.98
ATCGGGAGCT
85
2639.51
TCGATGTTGT
75
2328.98
TGTTTGACTT
74
2297.92
TAGCCAATTA
72
2235.82
CCTCTGGTGA
71
2204.76
GCGAGGAAAT
69
2142.66
ACCGTGCGGC
63
1956.34
Total number of rows:
12005
Table truncated, full table size
224 Kbytes
.
Supplementary data files not provided
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