NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM86751 Query DataSets for GSM86751
Status Public on Apr 08, 2006
Title Mutant Histone H2B^3-32 replicate 3
Sample type RNA
 
Source name Yeast RNA
Organism Saccharomyces cerevisiae
Characteristics PY016 (mutant Histone H2B^3-32)
Extracted molecule total RNA
Extraction protocol Cells were grown to mid-log phase (OD600=0.5-0.7) in rich media (YPD). Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Mutant yeast strain Histone H2B^3-32
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 08, 2005
Last update date May 21, 2012
Contact name John J. Wyrick
E-mail(s) jwyrick@vetmed.wsu.edu
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL90
Series (2)
GSE3802 Histone H2B^3-32
GSE3806 Histone H2B^3-32, H2B K->G, H2B^3-37, and H2B^30-37 mutations

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 1.3 A
AFFX-MurIL10_at 0.9 A
AFFX-MurIL4_at 1.1 A
AFFX-MurFAS_at 0.7 A
AFFX-BioB-5_at 27 P
AFFX-BioB-M_at 26.8 P
AFFX-BioB-3_at 26.3 P
AFFX-BioC-5_at 50.7 P
AFFX-BioC-3_at 50.9 P
AFFX-BioDn-5_at 59.4 P
AFFX-BioDn-3_at 294.5 P
AFFX-CreX-5_at 553.1 P
AFFX-CreX-3_at 671.4 P
AFFX-BioB-5_st 0.6 A
AFFX-BioB-M_st 1.3 A
AFFX-BioB-3_st 0.9 A
AFFX-BioC-5_st 1.9 A
AFFX-BioC-3_st 0.8 A
AFFX-BioDn-5_st 2.5 A
AFFX-BioDn-3_st 4.4 A

Total number of rows: 9335

Table truncated, full table size 140 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap