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Sample GSM86769 Query DataSets for GSM86769
Status Public on Apr 08, 2006
Title Mutant Histone H2B^30-37 replicate 3
Sample type RNA
 
Source name Yeast RNA
Organism Saccharomyces cerevisiae
Characteristics PY020 (mutant Histone H2B^30-37)
Extracted molecule total RNA
Extraction protocol Cells were grown to mid-log phase (OD600=0.5-0.7) in rich media (YPD). Cells were lysed and RNA was extracted by hot acid phenol chloroform and phenol chloroform isoamyl alcohol extraction.
Label biotin
Label protocol Approximately 20 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Mutant yeast strain Histone H2B^30-37
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 08, 2005
Last update date May 21, 2012
Contact name John J. Wyrick
E-mail(s) jwyrick@vetmed.wsu.edu
Phone 509-335-8785
Organization name Washington State University
Department School of Molecular Biosciences
Street address Biotechnology Life Sciences 241
City Pullman
State/province WA
ZIP/Postal code 99164
Country USA
 
Platform ID GPL90
Series (2)
GSE3805 Histone H2B^30-37
GSE3806 Histone H2B^3-32, H2B K->G, H2B^3-37, and H2B^30-37 mutations

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-MurIL2_at 1.5 A
AFFX-MurIL10_at 4.1 A
AFFX-MurIL4_at 2.7 A
AFFX-MurFAS_at 0.9 A
AFFX-BioB-5_at 27 P
AFFX-BioB-M_at 33.6 P
AFFX-BioB-3_at 34.6 P
AFFX-BioC-5_at 61.9 P
AFFX-BioC-3_at 44.3 P
AFFX-BioDn-5_at 88 P
AFFX-BioDn-3_at 293.6 P
AFFX-CreX-5_at 523.2 P
AFFX-CreX-3_at 484.7 P
AFFX-BioB-5_st 0.2 A
AFFX-BioB-M_st 0.9 A
AFFX-BioB-3_st 0.6 A
AFFX-BioC-5_st 1.1 A
AFFX-BioC-3_st 0.5 A
AFFX-BioDn-5_st 3.2 A
AFFX-BioDn-3_st 5.8 A

Total number of rows: 9335

Table truncated, full table size 141 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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