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Sample GSM871714 Query DataSets for GSM871714
Status Public on Sep 01, 2012
Title tomato_wild_type_1
Sample type RNA
 
Source name leaf
Organism Solanum lycopersicum
Characteristics species: Solanum lycopersicum
variety: MoneyMaker;
tissue: leaf
age: 28 days
Extracted molecule total RNA
Extraction protocol TriZol extraction according to manufacturer (Invitrogen, Life Technologies GmbH, Darmstadt, Germany)
Label biotin
Label protocol Manufacturer standard protocol (Affymetrix)
 
Hybridization protocol Manufacturer standard protocol (Affymetrix)
Scan protocol Manufacturer standard protocol (Affymetrix)
Data processing MAS5 normalization as implemented in the GCOS analysis software provided by affymetrix. The data were further normalized using the RMA method (Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U,Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003 Apr;4(2):249-64. PubMed PMID: 12925520.).
 
Submission date Feb 08, 2012
Last update date Sep 01, 2012
Contact name Marc Lohse
E-mail(s) lohse@mpimp-golm.mpg.de
Organization name MPIMP-Golm
Department Stitt
Lab Stitt
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code 14476
Country Germany
 
Platform ID GPL4741
Series (1)
GSE35618 Molecular analysis of a tomato OGDH antisense line

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.483216873
AFFX-BioB-5_at 8.727545466
AFFX-BioB-M_at 8.70778132
AFFX-BioC-3_at 10.17057731
AFFX-BioC-5_at 10.0377812
AFFX-BioDn-3_at 12.27730269
AFFX-BioDn-5_at 11.22625333
AFFX-CreX-3_at 13.73740239
AFFX-CreX-5_at 13.56844129
AFFX-DapX-3_at 3.797029598
AFFX-DapX-5_at 3.550531025
AFFX-DapX-M_at 4.478702533
AFFX-Le_17SrRNA_at 6.434158686
AFFX-Le_25SrRNA_at 6.677032884
AFFX-Le_GlutTrans_3_at 10.97739331
AFFX-Le_GlutTrans_5_at 12.022441
AFFX-Le_GlutTrans_M_r_at 10.23878171
AFFX-Le_PhyB2_3_at 5.742110745
AFFX-Le_PhyB2_5_at 3.506706027
AFFX-Le_PhyB2_M_at 3.660715485

Total number of rows: 10209

Table truncated, full table size 307 Kbytes.




Supplementary file Size Download File type/resource
GSM871714_Araujo_G1_20110722.CEL.gz 1.5 Mb (ftp)(http) CEL
GSM871714_Araujo_G1_20110722.CHP.gz 2.6 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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