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Sample GSM871715 Query DataSets for GSM871715
Status Public on Sep 01, 2012
Title tomato_wild_type_2
Sample type RNA
 
Source name leaf
Organism Solanum lycopersicum
Characteristics species: Solanum lycopersicum
variety: MoneyMaker;
tissue: leaf
age: 28 days
Extracted molecule total RNA
Extraction protocol TriZol extraction according to manufacturer (Invitrogen, Life Technologies GmbH, Darmstadt, Germany)
Label biotin
Label protocol Manufacturer standard protocol (Affymetrix)
 
Hybridization protocol Manufacturer standard protocol (Affymetrix)
Scan protocol Manufacturer standard protocol (Affymetrix)
Data processing MAS5 normalization as implemented in the GCOS analysis software provided by affymetrix. The data were further normalized using the RMA method (Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U,Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003 Apr;4(2):249-64. PubMed PMID: 12925520.).
 
Submission date Feb 08, 2012
Last update date Sep 01, 2012
Contact name Marc Lohse
E-mail(s) lohse@mpimp-golm.mpg.de
Organization name MPIMP-Golm
Department Stitt
Lab Stitt
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code 14476
Country Germany
 
Platform ID GPL4741
Series (1)
GSE35618 Molecular analysis of a tomato OGDH antisense line

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.22917054
AFFX-BioB-5_at 8.440374079
AFFX-BioB-M_at 8.610905248
AFFX-BioC-3_at 9.923954176
AFFX-BioC-5_at 9.767653151
AFFX-BioDn-3_at 12.11797754
AFFX-BioDn-5_at 11.01194977
AFFX-CreX-3_at 13.70160131
AFFX-CreX-5_at 13.50167681
AFFX-DapX-3_at 3.810288807
AFFX-DapX-5_at 3.494801816
AFFX-DapX-M_at 4.496110597
AFFX-Le_17SrRNA_at 6.304754669
AFFX-Le_25SrRNA_at 6.568203224
AFFX-Le_GlutTrans_3_at 10.60169752
AFFX-Le_GlutTrans_5_at 12.14795152
AFFX-Le_GlutTrans_M_r_at 9.925929697
AFFX-Le_PhyB2_3_at 7.180346873
AFFX-Le_PhyB2_5_at 3.604328709
AFFX-Le_PhyB2_M_at 3.664763513

Total number of rows: 10209

Table truncated, full table size 307 Kbytes.




Supplementary file Size Download File type/resource
GSM871715_Araujo_G2_20110722.CEL.gz 1.5 Mb (ftp)(http) CEL
GSM871715_Araujo_G2_20110722.CHP.gz 2.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
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