NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM871717 Query DataSets for GSM871717
Status Public on Sep 01, 2012
Title tomato_wild_type_4
Sample type RNA
 
Source name leaf
Organism Solanum lycopersicum
Characteristics species: Solanum lycopersicum
variety: MoneyMaker;
tissue: leaf
age: 28 days
Extracted molecule total RNA
Extraction protocol TriZol extraction according to manufacturer (Invitrogen, Life Technologies GmbH, Darmstadt, Germany)
Label biotin
Label protocol Manufacturer standard protocol (Affymetrix)
 
Hybridization protocol Manufacturer standard protocol (Affymetrix)
Scan protocol Manufacturer standard protocol (Affymetrix)
Data processing MAS5 normalization as implemented in the GCOS analysis software provided by affymetrix. The data were further normalized using the RMA method (Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U,Speed TP. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003 Apr;4(2):249-64. PubMed PMID: 12925520.).
 
Submission date Feb 08, 2012
Last update date Sep 01, 2012
Contact name Marc Lohse
E-mail(s) lohse@mpimp-golm.mpg.de
Organization name MPIMP-Golm
Department Stitt
Lab Stitt
Street address Am Muehlenberg 1
City Potsdam
ZIP/Postal code 14476
Country Germany
 
Platform ID GPL4741
Series (1)
GSE35618 Molecular analysis of a tomato OGDH antisense line

Data table header descriptions
ID_REF
VALUE RMA normalized signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.319682291
AFFX-BioB-5_at 8.554488805
AFFX-BioB-M_at 8.626741507
AFFX-BioC-3_at 9.985825729
AFFX-BioC-5_at 9.844919424
AFFX-BioDn-3_at 12.16620396
AFFX-BioDn-5_at 11.07864369
AFFX-CreX-3_at 13.77747303
AFFX-CreX-5_at 13.58956747
AFFX-DapX-3_at 3.852187866
AFFX-DapX-5_at 3.454337832
AFFX-DapX-M_at 4.453817432
AFFX-Le_17SrRNA_at 6.134635122
AFFX-Le_25SrRNA_at 6.556083355
AFFX-Le_GlutTrans_3_at 10.24627857
AFFX-Le_GlutTrans_5_at 11.87537716
AFFX-Le_GlutTrans_M_r_at 9.505161913
AFFX-Le_PhyB2_3_at 6.1644188
AFFX-Le_PhyB2_5_at 3.590360742
AFFX-Le_PhyB2_M_at 3.688137908

Total number of rows: 10209

Table truncated, full table size 307 Kbytes.




Supplementary file Size Download File type/resource
GSM871717_Araujo_G4_20110722.CEL.gz 1.5 Mb (ftp)(http) CEL
GSM871717_Araujo_G4_20110722.CHP.gz 2.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap