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Sample GSM87321 Query DataSets for GSM87321
Status Public on Feb 09, 2006
Title Lentinula edodes-mature fruit body after spore formation
Sample type SAGE
Anchor NlaIII
Tag Count 7363
Tag Length 10
 
Source name Strain L54 of Lentinula edodes (Shiitake mushroom)
Organism Lentinula edodes
Characteristics The gene expression profiles of L. edodes strain L54 mature fruit body after spore formation. Fruit bodies were germinated from L54 dikaryotic mycelium grown on sadust.
Extracted molecule total RNA
 
Description To analyze gene expression profiles at different developmental stages and identify differentially expressed genes that may relate to sporulation by comparing transcriptomes of mature fruit body before and after sporulation.
 
Submission date Dec 11, 2005
Last update date Nov 23, 2010
Contact name Hoi Shan Kwan
E-mail(s) hoishankwan@cuhk.edu.hk
Phone 852-2609-6270
Organization name The Chinese University of Hong Kong
Department Biology
Street address
City Shatin
State/province Hong Kong SAR
ZIP/Postal code N.T.
Country China
 
Platform ID GPL1457
Series (1)
GSE4202 Spore formation of Lentinula edodes
Relations
Affiliated with GSM625363

Data table header descriptions
TAG 10bp SAGE TAG
COUNT Number of each SAGE tag
TPM tags per million

Data table
TAG COUNT TPM
TAACTGAAAT 88 11951.65
CTTCTGATAT 79 10729.32
TAGTTTTCAA 77 10457.69
TAAATAGTTG 73 9914.44
GAAGACGAAA 53 7198.15
AACGGTTATA 49 6654.90
CCACTCCTTT 48 6519.08
TATTCCTCGC 46 6247.45
TCAACGTCGC 43 5840.01
AAATATAGTA 32 4346.05
TCTGACACTG 28 3802.80
CTTGTTATAA 27 3666.98
CTAAACGTAA 24 3259.54
TGCTACAAAC 24 3259.54
AACCATAAAC 23 3123.73
TGTACCCAAA 23 3123.73
CCTGTTTGAG 22 2987.91
GAGAAATCAC 22 2987.91
CAATGTTTGA 22 2987.91
ATCACGGACA 20 2716.28

Total number of rows: 4167

Table truncated, full table size 81 Kbytes.




Supplementary data files not provided

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