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Sample GSM875 Query DataSets for GSM875
Status Public on Feb 12, 2002
Title Nitrogen Depletion 8 h
Sample type RNA
 
Channel 1
Source name 0 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 8 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a31
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 67 58 58 132 31 110 101 109 33 142 .34 -100 .73 53 22 1.871 1.74 .534 .575 .46 1206 145 128 143 140 155 -.799
2 135 61 338 415 318 141 97 104 342 446 .84 0 .017 1.03 55 46 1.063 .988 .941 1.012 .74 1036 145 127 142 157 172 .017
3 192 62 3620 4390 4297 233 93 100 4620 4720 .83 0 .352 1.25 97 93 .842 .783 1.187 1.276 .9 1040 145 127 142 174 189 .352
4 129 59 176 298 210 206 88 95 226 320 .82 0 .36 1.35 42 45 .838 .779 1.193 1.283 .89 1027 145 127 142 192 207 .36
5 82 58 2554 3076 2985 146 91 98 3210 3308 .86 0 .33 1.31 94 94 .856 .796 1.169 1.257 .94 1049 145 126 141 209 224 .33
6 89 61 265 360 269 145 91 98 289 387 .76 0 .126 1.11 44 46 .985 .916 1.015 1.091 .71 1040 145 126 141 227 242 .126
7 75 61 -3 89 6 99 83 89 6 96 -.02 -100 1.82 19 24 -.03 1027 145 126 141 244 259
8 70 59 -2 79 -1 107 80 86 -1 85 .06 -100 1.26 15 19 .08 1017 145 126 141 262 277
9 80 56 0 79 2 103 77 83 2 85 .03 -100 1.42 19 22 .04 1049 145 125 140 279 294
10 138 58 2 84 11 100 73 78 12 90 .02 -100 1.95 22 26 .182 .169 5.5 5.914 .02 1030 145 125 140 297 312 2.564
11 169 59 3 85 11 163 74 80 12 91 -.02 -100 1.58 20 25 .273 .254 3.667 3.943 -.02 1027 145 125 140 314 329 1.979
12 137 58 0 78 4 174 74 80 4 84 0 -100 1.61 23 24 0 1049 145 124 139 332 347
13 117 54 5 78 7 119 71 76 8 84 .08 -100 1.3 23 26 .714 .664 1.4 1.505 .11 1040 145 124 139 349 364 .59
14 89 54 6 70 4 91 66 71 4 75 .05 -100 1.64 28 22 1.5 1.395 .667 .717 .05 1026 145 124 139 367 382 -.48
15 79 57 5 67 0 93 67 72 0 72 0 -100 1.53 23 21 0 1017 145 124 139 384 399
16 75 57 3 66 -1 90 67 72 -1 71 0 -100 .88 25 21 0 1049 145 123 138 402 417
17 69 55 2 67 4 87 63 68 4 72 .04 -100 1.88 23 27 .5 .465 2 2.151 .04 1040 145 123 138 419 434 1.105
18 66 52 3 76 13 86 63 68 14 82 -.02 -100 1.37 26 32 .231 .215 4.333 4.659 -.02 1026 145 123 138 437 452 2.22
19 74 53 9 63 3 90 60 65 3 68 .09 -100 2.63 21 23 3 2.79 .333 .358 .06 1049 145 122 137 454 469 -1.48
20 89 56 8 71 12 92 59 63 13 76 0 -100 .94 26 30 .667 .62 1.5 1.613 0 1049 145 122 137 472 487 .69

Total number of rows: 9216

Table truncated, full table size 1065 Kbytes.




Supplementary data files not provided
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