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Sample GSM881 Query DataSets for GSM881
Status Public on Feb 12, 2002
Title Nitrogen Depletion 1 h
Sample type RNA
 
Channel 1
Source name 0 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name 1 h
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description This experiment was an out file converted from rana. The original files were not provided to load this experiment in Oracle. Category and Subcategories were made by curators
ScanAlyze version unknown scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12a28
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 93 69 1486 2928 2868 110 60 43 2034 2077 .75 0 .453 1.36 98 97 .518 .731 1.93 1.369 2.35 1206 145 81 96 166 181 .453
2 129 68 11 103 40 140 63 45 28 73 .35 0 1.367 1.2 27 42 .275 .388 3.636 2.579 .81 1049 145 80 95 183 198 1.367
3 118 58 2160 4309 4248 133 61 43 3013 3056 .82 0 .48 1.39 97 99 .508 .717 1.967 1.395 2.16 1058 145 80 95 201 216 .48
4 80 56 13 89 31 110 58 41 22 63 .42 0 .758 1.04 28 40 .419 .591 2.385 1.691 .84 1049 145 80 95 218 233 .758
5 69 57 1183 2440 2380 98 60 43 1688 1730 .8 0 .513 1.46 94 99 .497 .701 2.012 1.427 2.03 1062 145 80 95 236 251 .513
6 68 56 44 141 80 105 61 43 57 100 .72 0 .367 1.09 30 44 .55 .776 1.818 1.289 1.42 1049 145 80 95 254 269 .367
7 65 55 8 68 9 89 59 42 6 48 -.09 -100 .79 23 30 .889 1.253 1.125 .798 -.1 1049 145 80 95 271 286 -.326
8 66 55 -3 67 10 87 57 40 7 48 .14 -100 .94 17 26 .26 1062 145 80 95 289 304
9 64 54 6 71 13 79 58 41 9 50 .25 0 .62 1.07 19 26 .462 .651 2.167 1.537 .51 1026 145 80 95 307 322 .62
10 128 54 1 70 5 121 65 46 4 50 -.09 -100 .99 23 21 .2 .282 5 3.546 -.19 1017 145 80 95 324 339 1.826
11 163 58 8 81 11 203 70 50 8 57 .28 -100 1.21 28 26 .727 1.025 1.375 .975 .57 1040 145 80 95 342 357 -.036
12 153 59 -4 71 4 246 67 48 3 50 .1 -100 .71 18 26 .18 1017 145 80 95 360 375
13 148 57 -4 69 2 185 67 48 1 49 -.02 -100 .9 17 19 -.06 1017 145 80 95 377 392
14 104 57 -1 83 12 128 71 50 9 59 .17 -100 1.04 21 27 .36 1071 145 79 94 395 410
15 77 55 4 76 9 129 67 48 6 54 .14 -100 1.31 26 28 .444 .627 2.25 1.596 .28 1049 145 79 94 413 428 .674
16 69 52 13 70 3 115 67 48 2 50 .21 0 -2.611 .58 31 20 4.333 6.11 .231 .164 .27 1049 145 79 94 430 445 -2.611
17 66 51 9 64 -1 95 65 46 -1 45 .11 -100 .59 32 16 .18 1071 145 79 94 448 463
18 66 55 3 60 1 84 59 42 1 43 .02 -100 1.19 23 22 3 4.23 .333 .236 .02 1049 145 79 94 466 481 -2.081
19 67 56 4 63 4 99 59 42 3 45 .14 -100 .51 23 19 1 1.41 1 .709 .22 1049 145 79 94 483 498 -.496
20 79 54 3 61 -1 103 62 44 -1 43 .03 -100 .71 23 20 .04 1062 145 79 94 501 516

Total number of rows: 9216

Table truncated, full table size 1067 Kbytes.




Supplementary data files not provided
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