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Sample GSM88172 Query DataSets for GSM88172
Status Public on Aug 22, 2007
Title yeast_nup84gcr1 null vs WT_glucose_rep3
Sample type RNA
 
Channel 1
Source name wild type, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics wild type reporter strain (NJS1) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy5
 
Channel 2
Source name nup84gcr1 null, 2% glucose
Organism Saccharomyces cerevisiae
Characteristics nup84gcr1 null reporter strain (NJS33) from S288C background; grown to early-mid log in YEPD at 23 degrees Celcius
Extracted molecule total RNA
Label Cy3
 
 
Description labeling done with Agilent's Low RNA Input Linear Amp kit; hybridization and slide processing done according to Agilent instructions
Data processing log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
 
Submission date Dec 16, 2005
Last update date Aug 23, 2006
Contact name Kellie Barbara
E-mail(s) kellie.barbara@gmail.com
Organization name Univ. of Southern MS
Department Biological Sciences
Lab Santangelo Lab
Street address 118 College Dr. #5018
City Hattiesburg
State/province MS
ZIP/Postal code 39406
Country USA
 
Platform ID GPL2883
Series (1)
GSE3853 Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)

Data table header descriptions
ID_REF
VALUE ratio-based and LOWESS normalized log2 ratio
F635 Mean - B635 channel 1 mean minus background
F532 Mean - B532 channel 2 mean minus background

Data table
ID_REF VALUE F635 Mean - B635 F532 Mean - B532
1 -8.121 22 5094
2 -1.257 19 39
3 -0.531 59 194
4 1.066 45 44
5 1.969 126 72
6 -1.602 6 22
7 -1.339 27 153
8 0.053 45 52
9 1.975 139 77
10 0.61 229 330
11 -1.147 79 341
12 0.381 178 292
13 -0.45 15 34
14 -0.464 889 2629
15 -1.45 5 19
16 0.532 149 230
17 -2.257 3 22
18 1.087 794 820
19 1.928 434 253
20 -0.865 44 57

Total number of rows: 10807

Table truncated, full table size 190 Kbytes.




Supplementary data files not provided

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