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GEO accession:
Sample GSM88172
Query DataSets for GSM88172
Status
Public on Aug 22, 2007
Title
yeast_nup84gcr1 null vs WT_glucose_rep3
Sample type
RNA
Channel 1
Source name
wild type, 2% glucose
Organism
Saccharomyces cerevisiae
Characteristics
wild type reporter strain (NJS1) from S288C background; grown to early-mid log in YPD at 23 degrees Celcius
Extracted molecule
total RNA
Label
Cy5
Channel 2
Source name
nup84gcr1 null, 2% glucose
Organism
Saccharomyces cerevisiae
Characteristics
nup84gcr1 null reporter strain (NJS33) from S288C background; grown to early-mid log in YEPD at 23 degrees Celcius
Extracted molecule
total RNA
Label
Cy3
Description
labeling done with Agilent's Low RNA Input Linear Amp kit; hybridization and slide processing done according to Agilent instructions
Data processing
log2 ratio after ratio-based and LOWESS normalization in Acuity 4.0
Submission date
Dec 16, 2005
Last update date
Aug 23, 2006
Contact name
Kellie Barbara
E-mail(s)
kellie.barbara@gmail.com
Organization name
Univ. of Southern MS
Department
Biological Sciences
Lab
Santangelo Lab
Street address
118 College Dr. #5018
City
Hattiesburg
State/province
MS
ZIP/Postal code
39406
Country
USA
Platform ID
GPL2883
Series (1)
GSE3853
Transcriptome response to the deletion of Gcr1, Nup84 or Nup84 & Gcr1 (double deletion)
Data table header descriptions
ID_REF
VALUE
ratio-based and LOWESS normalized log2 ratio
F635 Mean - B635
channel 1 mean minus background
F532 Mean - B532
channel 2 mean minus background
Data table
ID_REF
VALUE
F635 Mean - B635
F532 Mean - B532
1
-8.121
22
5094
2
-1.257
19
39
3
-0.531
59
194
4
1.066
45
44
5
1.969
126
72
6
-1.602
6
22
7
-1.339
27
153
8
0.053
45
52
9
1.975
139
77
10
0.61
229
330
11
-1.147
79
341
12
0.381
178
292
13
-0.45
15
34
14
-0.464
889
2629
15
-1.45
5
19
16
0.532
149
230
17
-2.257
3
22
18
1.087
794
820
19
1.928
434
253
20
-0.865
44
57
Total number of rows:
10807
Table truncated, full table size
190 Kbytes
.
Supplementary data files not provided
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