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Sample GSM898809 Query DataSets for GSM898809
Status Public on Jun 25, 2012
Title wild type fetal liver #3
Sample type RNA
 
Source name E14.5 Rnaseh2b wild type embryo
Organism Mus musculus
Characteristics age: E14.5
line: Rnaseh2b
tissue: embryo
genotype/variation: wild type
Extracted molecule total RNA
Extraction protocol RNA extraction was performed by the acid guanidinium thiocyanate-phenol-chloroform method (Chomczynski, P. & Sacchi, N. The single-step method of RNA isolation by acid guanidiniumthiocyanate-phenol-chloroform extraction: twenty-something years on. Nat. Protoc. 1, 581-585(2006).)
Label biotin
Label protocol RNA was reverse transcribed, amplified and biotin-labeled using the Message Amp II-Biotin Enhanced Kit (Ambion)
 
Hybridization protocol Hybridization, staining and scanning of the GeneChip Mouse Genome 430 2.0microarrays were performed according to the Affymetrix GeneChip Expression Analysis Technical Manual P/N 702232 Rev. 3 (Affymetrix)
Scan protocol according to the Affymetrix GeneChip Expression Analysis Technical Manual P/N 702232 Rev. 3 (Affymetrix)
Data processing Microarray data was analysed using the Genespring GX software
 
Submission date Mar 21, 2012
Last update date Jun 25, 2012
Contact name Björn Hiller
E-mail(s) bjoern.hiller@tu-dresden.de
Phone 00493514586503
Organization name TU Dresden
Department Institute for Immunology
Lab AG Roers
Street address Fiedlerstrasse 42
City Dresden
ZIP/Postal code 01307
Country Germany
 
Platform ID GPL1261
Series (1)
GSE36687 Microarray of Rnaseh2b KOF and RnaseH2b wild type fetal liver

Data table header descriptions
ID_REF
VALUE RMA normalized

Data table
ID_REF VALUE
AFFX-BioB-5_at 7.960883
AFFX-BioB-M_at 8.595016
AFFX-BioB-3_at 8.702806
AFFX-BioC-5_at 9.300488
AFFX-BioC-3_at 10.08671
AFFX-BioDn-5_at 10.43824
AFFX-BioDn-3_at 12.29138
AFFX-CreX-5_at 13.35043
AFFX-CreX-3_at 13.74877
AFFX-DapX-5_at 8.391802
AFFX-DapX-M_at 9.432155
AFFX-DapX-3_at 10.06132
AFFX-LysX-5_at 6.075994
AFFX-LysX-M_at 6.631137
AFFX-LysX-3_at 7.661267
AFFX-PheX-5_at 6.895315
AFFX-PheX-M_at 6.91429
AFFX-PheX-3_at 7.893416
AFFX-ThrX-5_at 7.185352
AFFX-ThrX-M_at 7.560762

Total number of rows: 45101

Table truncated, full table size 894 Kbytes.




Supplementary file Size Download File type/resource
GSM898809.CEL.gz 3.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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