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Sample GSM899 Query DataSets for GSM899
Status Public on Feb 12, 2002
Title CLN3 induction 40 minutes
Sample type RNA
 
Channel 1
Source name CLN3 0
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name CLN3 40
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.44 scanning software was used.
Keywords = Cell-cycle
Keywords = CLN3 - Yeast
Lot batch = y80n9a
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL61
Series (1)
GSE25 Cyclin overexpression

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 493 488 8515 675 22 653 653 2839 96 2935 .666 0 -6.471 .025 30 1 387.045 88.698 .003 .011 .003 975 52 32 40 10 18 -6.471
2 500 488 18 662 9 658 653 2839 39 2878 .308 0 1.115 .962 0 0 2 .462 .5 2.167 .231 1025 52 32 40 20 28 1.115
3 507 496 7358 653 663 661 2874 2839 .431 0 .107 28 0 .002 899 52 32 40 30 38
4 514 504 898 648 666 661 2874 2817 .28 0 .084 17 0 .009 875 52 32 40 40 48
5 514 496 642 666 661 2874 2791 .32 0 .962 0 0 .155 870 52 32 40 50 58
6 512 496 85 684 23 665 661 2874 100 2974 .318 0 .234 .962 5 0 3.696 .85 .271 1.176 .079 849 52 32 40 60 68 .234
7 514 504 670 9 663 661 2874 39 2913 .276 0 .687 1 0 .126 824 52 32 40 70 78
8 516 504 31 665 4 663 661 2874 17 2891 .214 0 -.867 .641 1 0 7.75 1.824 .129 .548 .08 802 52 32 40 79 87 -.867
9 509 504 656 666 661 2874 2852 .184 0 .962 0 0 .224 805 52 31 39 89 97
10 509 504 47 707 46 667 661 2874 200 3074 .528 0 2.089 .769 5 5 1.022 .235 .979 4.255 .404 791 52 31 39 99 107 2.089
11 508 504 669 669 669 2909 2909 .303 0 .561 0 0 .315 782 52 31 39 109 117
12 514 504 45 682 13 682 669 2909 56 2965 .442 0 .316 .962 3 0 3.462 .804 .289 1.244 .39 774 52 31 39 119 127 .316
13 519 512 159 1159 483 690 676 2939 2100 5039 .928 0 3.723 1.923 17 19 .329 .076 3.038 13.208 3.075 783 52 31 39 129 137 3.723
14 524 512 22 702 26 702 676 2939 113 3052 .604 0 2.361 .699 3 5 .846 .195 1.182 5.136 .945 807 52 31 39 139 147 2.361
15 526 512 692 16 704 676 2939 70 3009 .624 0 .687 0 3 1.139 832 52 31 39 149 157
16 523 512 676 705 676 2939 2939 .487 0 2.644 0 0 .944 848 52 31 39 160 168
17 520 504 687 11 701 676 2939 48 2987 .518 0 1.803 1 1 .942 854 52 31 39 170 178
18 515 504 673 4 693 669 2909 17 2926 .516 0 .376 0 0 .732 845 52 31 39 180 188
19 511 496 683 14 695 669 2909 61 2970 .543 0 1.082 0 1 .953 840 52 31 39 190 198
20 509 496 680 11 709 669 2909 48 2957 .623 0 1.25 0 0 1.555 847 52 31 39 200 208

Total number of rows: 7744

Table truncated, full table size 922 Kbytes.




Supplementary data files not provided
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