|
| Status |
Public on Mar 29, 2012 |
| Title |
genomic DNA from cord blood sample 10AB-104B |
| Sample type |
genomic |
| |
|
| Source name |
cord blood sample 10AB-104B
|
| Organism |
Homo sapiens |
| Characteristics |
birth weight (g): 3714
gestational age (wks): 39.43
birth weight (%): 74
tissue: Cord Blood
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions. The Zymo Bisulphite Conversion Kit was used to convert the DNA samples.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
Cord Blood DNA
10AB-104B
|
| Data processing |
BeadStudio software v3.2
|
| |
|
| Submission date |
Mar 26, 2012 |
| Last update date |
Mar 29, 2012 |
| Contact name |
Nahid Turan |
| E-mail(s) |
nturan@temple.edu
|
| Phone |
215-707-7302
|
| Organization name |
Temple University School of Medicine
|
| Department |
Fels Institute
|
| Street address |
3307 North Broad Street, AHB
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19140 |
| Country |
USA |
| |
|
| Platform ID |
GPL8490 |
| Series (2) |
| GSE36812 |
Epigenome analysis of cord blood samples from newborns |
| GSE36831 |
DNA methylation and gene expression differences at growth related genes correlate with birth weight. |
|
